Hb_006198_070

Information

Type -
Description -
Location Contig6198: 47436-50332
Sequence    

Annotation

kegg
ID rcu:RCOM_1721250
description pantoate-beta-alanine ligase, putative (EC:6.3.2.1)
nr
ID XP_002521113.1
description pantoate-beta-alanine ligase, putative [Ricinus communis]
swissprot
ID O24035
description Pantoate--beta-alanine ligase OS=Lotus japonicus GN=PANC PE=1 SV=3
trembl
ID B9S544
description Pantoate-beta-alanine ligase, putative OS=Ricinus communis GN=RCOM_1721250 PE=3 SV=1
Gene Ontology
ID GO:0005829
description pantoate--beta-alanine ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51372: 47720-50159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_070 0.0 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
2 Hb_005843_140 0.0537723985 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
3 Hb_026527_050 0.0778619814 - - PREDICTED: 39S ribosomal protein L47, mitochondrial-like isoform X1 [Populus euphratica]
4 Hb_003669_020 0.0795749809 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
5 Hb_003540_240 0.0872535987 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
6 Hb_006355_040 0.0874227573 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
7 Hb_004057_010 0.0875847351 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
8 Hb_000169_040 0.0894243617 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
9 Hb_002232_060 0.0921335509 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
10 Hb_001718_030 0.0932242558 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
11 Hb_001188_030 0.0935232393 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
12 Hb_000424_200 0.0941996379 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
13 Hb_000327_060 0.0950691997 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
14 Hb_018133_020 0.0955640565 - - transporter, putative [Ricinus communis]
15 Hb_001931_010 0.0965105931 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
16 Hb_000676_390 0.0971028883 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
17 Hb_011457_050 0.0978928495 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
18 Hb_000310_020 0.0979013044 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
19 Hb_004143_150 0.0982593875 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
20 Hb_158445_010 0.0995696221 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006198_070 Hb_006198_070 Hb_005843_140 Hb_005843_140 Hb_006198_070--Hb_005843_140 Hb_026527_050 Hb_026527_050 Hb_006198_070--Hb_026527_050 Hb_003669_020 Hb_003669_020 Hb_006198_070--Hb_003669_020 Hb_003540_240 Hb_003540_240 Hb_006198_070--Hb_003540_240 Hb_006355_040 Hb_006355_040 Hb_006198_070--Hb_006355_040 Hb_004057_010 Hb_004057_010 Hb_006198_070--Hb_004057_010 Hb_044653_040 Hb_044653_040 Hb_005843_140--Hb_044653_040 Hb_005843_140--Hb_003669_020 Hb_002968_040 Hb_002968_040 Hb_005843_140--Hb_002968_040 Hb_005843_140--Hb_006355_040 Hb_000505_130 Hb_000505_130 Hb_005843_140--Hb_000505_130 Hb_004102_110 Hb_004102_110 Hb_026527_050--Hb_004102_110 Hb_003052_190 Hb_003052_190 Hb_026527_050--Hb_003052_190 Hb_000667_070 Hb_000667_070 Hb_026527_050--Hb_000667_070 Hb_026527_050--Hb_003540_240 Hb_005496_140 Hb_005496_140 Hb_026527_050--Hb_005496_140 Hb_003669_020--Hb_044653_040 Hb_000310_020 Hb_000310_020 Hb_003669_020--Hb_000310_020 Hb_011512_070 Hb_011512_070 Hb_003669_020--Hb_011512_070 Hb_003669_020--Hb_000505_130 Hb_002056_050 Hb_002056_050 Hb_003540_240--Hb_002056_050 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_006355_040--Hb_002968_040 Hb_006355_040--Hb_003669_020 Hb_026053_020 Hb_026053_020 Hb_004057_010--Hb_026053_020 Hb_000676_390 Hb_000676_390 Hb_004057_010--Hb_000676_390 Hb_018133_020 Hb_018133_020 Hb_004057_010--Hb_018133_020 Hb_001726_040 Hb_001726_040 Hb_004057_010--Hb_001726_040 Hb_001329_150 Hb_001329_150 Hb_004057_010--Hb_001329_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.64487 5.85579 9.97392 8.55788 4.78164 6.27952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55356 26.4297 12.0964 6.4032 11.3779

CAGE analysis