Hb_006198_100

Information

Type -
Description -
Location Contig6198: 73648-74817
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04430g
description POPTRDRAFT_655968; RNA recognition motif-containing family protein
nr
ID XP_012073739.1
description PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID A0A067LNV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06665 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna recognition motif-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51374: 73642-74736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_100 0.0 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
2 Hb_059226_010 0.0862730519 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
3 Hb_002203_010 0.1051499559 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
4 Hb_002836_110 0.1052807659 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
5 Hb_000538_290 0.1067501258 - - hypothetical protein RCOM_0303940 [Ricinus communis]
6 Hb_009113_020 0.1102760673 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
7 Hb_001623_250 0.1114940965 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
8 Hb_000107_360 0.112297065 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
9 Hb_000028_080 0.1163871033 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
10 Hb_003006_070 0.1185137929 - - aquaporin [Manihot esculenta]
11 Hb_000072_230 0.1211891439 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
12 Hb_001856_210 0.1241048212 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
13 Hb_004880_040 0.1262827893 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
14 Hb_001349_050 0.1297316227 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
15 Hb_002686_320 0.1301623523 - - syntaxin, putative [Ricinus communis]
16 Hb_000701_020 0.1304364916 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
17 Hb_003185_040 0.132486411 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
18 Hb_001971_040 0.1336684846 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
19 Hb_003085_070 0.1338885289 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
20 Hb_006693_010 0.1348887372 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]

Gene co-expression network

sample Hb_006198_100 Hb_006198_100 Hb_059226_010 Hb_059226_010 Hb_006198_100--Hb_059226_010 Hb_002203_010 Hb_002203_010 Hb_006198_100--Hb_002203_010 Hb_002836_110 Hb_002836_110 Hb_006198_100--Hb_002836_110 Hb_000538_290 Hb_000538_290 Hb_006198_100--Hb_000538_290 Hb_009113_020 Hb_009113_020 Hb_006198_100--Hb_009113_020 Hb_001623_250 Hb_001623_250 Hb_006198_100--Hb_001623_250 Hb_000418_040 Hb_000418_040 Hb_059226_010--Hb_000418_040 Hb_006693_010 Hb_006693_010 Hb_059226_010--Hb_006693_010 Hb_059226_010--Hb_000538_290 Hb_000107_360 Hb_000107_360 Hb_059226_010--Hb_000107_360 Hb_059226_010--Hb_009113_020 Hb_000213_020 Hb_000213_020 Hb_002203_010--Hb_000213_020 Hb_000359_100 Hb_000359_100 Hb_002203_010--Hb_000359_100 Hb_001349_050 Hb_001349_050 Hb_002203_010--Hb_001349_050 Hb_004005_060 Hb_004005_060 Hb_002203_010--Hb_004005_060 Hb_002818_060 Hb_002818_060 Hb_002203_010--Hb_002818_060 Hb_000878_080 Hb_000878_080 Hb_002203_010--Hb_000878_080 Hb_002836_110--Hb_009113_020 Hb_002836_110--Hb_001623_250 Hb_003006_070 Hb_003006_070 Hb_002836_110--Hb_003006_070 Hb_002836_110--Hb_001349_050 Hb_003085_070 Hb_003085_070 Hb_002836_110--Hb_003085_070 Hb_002836_110--Hb_000538_290 Hb_002686_320 Hb_002686_320 Hb_000538_290--Hb_002686_320 Hb_000538_290--Hb_009113_020 Hb_006810_040 Hb_006810_040 Hb_000538_290--Hb_006810_040 Hb_000701_020 Hb_000701_020 Hb_000538_290--Hb_000701_020 Hb_000977_190 Hb_000977_190 Hb_000538_290--Hb_000977_190 Hb_000187_050 Hb_000187_050 Hb_000538_290--Hb_000187_050 Hb_009113_020--Hb_002686_320 Hb_009545_060 Hb_009545_060 Hb_009113_020--Hb_009545_060 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050 Hb_001623_250--Hb_003006_070 Hb_001623_250--Hb_001349_050 Hb_001623_250--Hb_003085_070 Hb_002894_060 Hb_002894_060 Hb_001623_250--Hb_002894_060 Hb_001623_250--Hb_002818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.369583 22.216 21.6324 0 0.0273857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.356345 0.504319 0 1.09028 3.58437

CAGE analysis