Hb_006198_150

Information

Type -
Description -
Location Contig6198: 106289-115744
Sequence    

Annotation

kegg
ID rcu:RCOM_1721090
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_150 0.0 - - -
2 Hb_017987_040 0.1058200123 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
3 Hb_007729_010 0.1256190238 - - unnamed protein product [Vitis vinifera]
4 Hb_002019_030 0.1479901954 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
5 Hb_000836_510 0.1494822404 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000185_060 0.1553343988 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
7 Hb_000856_350 0.1569922392 transcription factor TF Family: WRKY WRKY transcription factor 36 [Jatropha curcas]
8 Hb_000877_090 0.1593226125 - - allergenic-related protein Pt2L4 [Manihot esculenta]
9 Hb_005000_220 0.1633428119 - - gulonolactone oxidase, putative [Ricinus communis]
10 Hb_001269_020 0.1639678727 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
11 Hb_000300_570 0.1642277018 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
12 Hb_000260_320 0.1663035076 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
13 Hb_011362_020 0.1665338117 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_008053_070 0.1669037045 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
15 Hb_001489_030 0.1718695848 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
16 Hb_008616_020 0.1723247943 - - unnamed protein product [Vitis vinifera]
17 Hb_000031_130 0.173339592 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
18 Hb_000380_040 0.1733845402 - - bel1 homeotic protein, putative [Ricinus communis]
19 Hb_002677_010 0.1740018931 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
20 Hb_007666_040 0.1741630599 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_006198_150 Hb_006198_150 Hb_017987_040 Hb_017987_040 Hb_006198_150--Hb_017987_040 Hb_007729_010 Hb_007729_010 Hb_006198_150--Hb_007729_010 Hb_002019_030 Hb_002019_030 Hb_006198_150--Hb_002019_030 Hb_000836_510 Hb_000836_510 Hb_006198_150--Hb_000836_510 Hb_000185_060 Hb_000185_060 Hb_006198_150--Hb_000185_060 Hb_000856_350 Hb_000856_350 Hb_006198_150--Hb_000856_350 Hb_005000_220 Hb_005000_220 Hb_017987_040--Hb_005000_220 Hb_001489_030 Hb_001489_030 Hb_017987_040--Hb_001489_030 Hb_008503_020 Hb_008503_020 Hb_017987_040--Hb_008503_020 Hb_007666_040 Hb_007666_040 Hb_017987_040--Hb_007666_040 Hb_008053_070 Hb_008053_070 Hb_017987_040--Hb_008053_070 Hb_007729_010--Hb_000856_350 Hb_002677_010 Hb_002677_010 Hb_007729_010--Hb_002677_010 Hb_181092_010 Hb_181092_010 Hb_007729_010--Hb_181092_010 Hb_032582_010 Hb_032582_010 Hb_007729_010--Hb_032582_010 Hb_001269_020 Hb_001269_020 Hb_007729_010--Hb_001269_020 Hb_006418_010 Hb_006418_010 Hb_002019_030--Hb_006418_010 Hb_004656_020 Hb_004656_020 Hb_002019_030--Hb_004656_020 Hb_003253_060 Hb_003253_060 Hb_002019_030--Hb_003253_060 Hb_000877_090 Hb_000877_090 Hb_002019_030--Hb_000877_090 Hb_001114_210 Hb_001114_210 Hb_002019_030--Hb_001114_210 Hb_009083_080 Hb_009083_080 Hb_002019_030--Hb_009083_080 Hb_011362_020 Hb_011362_020 Hb_000836_510--Hb_011362_020 Hb_000836_510--Hb_017987_040 Hb_000836_510--Hb_000856_350 Hb_000836_510--Hb_007729_010 Hb_002005_010 Hb_002005_010 Hb_000836_510--Hb_002005_010 Hb_008616_020 Hb_008616_020 Hb_000185_060--Hb_008616_020 Hb_000185_060--Hb_002677_010 Hb_000185_060--Hb_032582_010 Hb_000185_060--Hb_008053_070 Hb_000185_060--Hb_181092_010 Hb_001376_040 Hb_001376_040 Hb_000185_060--Hb_001376_040 Hb_000856_350--Hb_181092_010 Hb_156949_010 Hb_156949_010 Hb_000856_350--Hb_156949_010 Hb_002986_110 Hb_002986_110 Hb_000856_350--Hb_002986_110 Hb_013654_010 Hb_013654_010 Hb_000856_350--Hb_013654_010 Hb_000856_350--Hb_032582_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480099 15.5666 0.112421 0.82941 0.0451189 0.08577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2296 0.263515 0 15.9547 0.168053

CAGE analysis