Hb_006198_160

Information

Type -
Description -
Location Contig6198: 114217-114664
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24290g
description POPTRDRAFT_830571; hypothetical protein
nr
ID XP_002303034.1
description hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
swissprot
ID Q8LG89
description Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2
trembl
ID B9GNJ7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s24290g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_160 0.0 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
2 Hb_015447_010 0.0022103869 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
3 Hb_101724_010 0.0052665747 - - glutamate receptor family protein [Populus trichocarpa]
4 Hb_093541_010 0.00631156 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000087_110 0.0082756128 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003849_210 0.0084822492 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
7 Hb_010128_140 0.0110279238 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
8 Hb_001552_010 0.0144989987 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005081_050 0.0150985522 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
10 Hb_005356_020 0.0152281724 - - glutaredoxin, grx, putative [Ricinus communis]
11 Hb_073680_010 0.0169514219 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
12 Hb_157950_010 0.0170642866 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
13 Hb_003424_040 0.0183581326 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
14 Hb_003687_060 0.0189348862 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003038_020 0.0196610283 - - unnamed protein product [Coffea canephora]
16 Hb_001922_140 0.0197952392 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005333_090 0.0204190633 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
18 Hb_004899_240 0.0237125641 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002157_110 0.0267800463 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
20 Hb_149495_010 0.0317238388 - - putative starch phosphorylase, partial [Sorghum bicolor]

Gene co-expression network

sample Hb_006198_160 Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_006198_160--Hb_015447_010 Hb_101724_010 Hb_101724_010 Hb_006198_160--Hb_101724_010 Hb_093541_010 Hb_093541_010 Hb_006198_160--Hb_093541_010 Hb_000087_110 Hb_000087_110 Hb_006198_160--Hb_000087_110 Hb_003849_210 Hb_003849_210 Hb_006198_160--Hb_003849_210 Hb_010128_140 Hb_010128_140 Hb_006198_160--Hb_010128_140 Hb_015447_010--Hb_003849_210 Hb_015447_010--Hb_101724_010 Hb_015447_010--Hb_093541_010 Hb_015447_010--Hb_010128_140 Hb_015447_010--Hb_000087_110 Hb_101724_010--Hb_093541_010 Hb_101724_010--Hb_000087_110 Hb_005081_050 Hb_005081_050 Hb_101724_010--Hb_005081_050 Hb_073680_010 Hb_073680_010 Hb_101724_010--Hb_073680_010 Hb_093541_010--Hb_000087_110 Hb_093541_010--Hb_005081_050 Hb_093541_010--Hb_073680_010 Hb_000087_110--Hb_005081_050 Hb_000087_110--Hb_073680_010 Hb_157950_010 Hb_157950_010 Hb_000087_110--Hb_157950_010 Hb_003849_210--Hb_010128_140 Hb_001552_010 Hb_001552_010 Hb_003849_210--Hb_001552_010 Hb_005356_020 Hb_005356_020 Hb_003849_210--Hb_005356_020 Hb_003687_060 Hb_003687_060 Hb_003849_210--Hb_003687_060 Hb_010128_140--Hb_001552_010 Hb_010128_140--Hb_005356_020 Hb_010128_140--Hb_003687_060 Hb_003038_020 Hb_003038_020 Hb_010128_140--Hb_003038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0911164 0.748636 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis