Hb_006198_180

Information

Type -
Description -
Location Contig6198: 120534-122974
Sequence    

Annotation

kegg
ID rcu:RCOM_1720960
description hypothetical protein
nr
ID XP_012085122.1
description PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
swissprot
ID Q03730
description Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML018C PE=1 SV=1
trembl
ID A0A067JR84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17555 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_180 0.0 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
2 Hb_011316_060 0.1334077663 - - alpha-l-fucosidase, putative [Ricinus communis]
3 Hb_012545_050 0.1904084354 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
4 Hb_017987_060 0.1929275543 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
5 Hb_000191_020 0.1949485722 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000141_020 0.1991407595 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
7 Hb_000784_030 0.2052713665 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
8 Hb_001232_140 0.2053632853 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
9 Hb_000562_040 0.2093285604 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
10 Hb_001159_080 0.2100353419 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
11 Hb_001369_450 0.2118775812 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_001135_210 0.2131823291 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
13 Hb_000802_100 0.2156901 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
14 Hb_005489_100 0.2167729971 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003504_020 0.2170775813 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
16 Hb_024714_060 0.2195720403 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
17 Hb_020419_020 0.2204692838 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_004048_050 0.2229774999 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
19 Hb_005569_020 0.2249119783 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003581_260 0.2276746224 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]

Gene co-expression network

sample Hb_006198_180 Hb_006198_180 Hb_011316_060 Hb_011316_060 Hb_006198_180--Hb_011316_060 Hb_012545_050 Hb_012545_050 Hb_006198_180--Hb_012545_050 Hb_017987_060 Hb_017987_060 Hb_006198_180--Hb_017987_060 Hb_000191_020 Hb_000191_020 Hb_006198_180--Hb_000191_020 Hb_000141_020 Hb_000141_020 Hb_006198_180--Hb_000141_020 Hb_000784_030 Hb_000784_030 Hb_006198_180--Hb_000784_030 Hb_011316_060--Hb_000141_020 Hb_001159_080 Hb_001159_080 Hb_011316_060--Hb_001159_080 Hb_005569_020 Hb_005569_020 Hb_011316_060--Hb_005569_020 Hb_011316_060--Hb_000191_020 Hb_001096_110 Hb_001096_110 Hb_011316_060--Hb_001096_110 Hb_001488_370 Hb_001488_370 Hb_012545_050--Hb_001488_370 Hb_000264_020 Hb_000264_020 Hb_012545_050--Hb_000264_020 Hb_001437_130 Hb_001437_130 Hb_012545_050--Hb_001437_130 Hb_000373_180 Hb_000373_180 Hb_012545_050--Hb_000373_180 Hb_000392_380 Hb_000392_380 Hb_012545_050--Hb_000392_380 Hb_000239_030 Hb_000239_030 Hb_012545_050--Hb_000239_030 Hb_001956_070 Hb_001956_070 Hb_017987_060--Hb_001956_070 Hb_017987_060--Hb_000141_020 Hb_000802_100 Hb_000802_100 Hb_017987_060--Hb_000802_100 Hb_003504_020 Hb_003504_020 Hb_017987_060--Hb_003504_020 Hb_003579_030 Hb_003579_030 Hb_017987_060--Hb_003579_030 Hb_000069_700 Hb_000069_700 Hb_017987_060--Hb_000069_700 Hb_000035_430 Hb_000035_430 Hb_000191_020--Hb_000035_430 Hb_089100_020 Hb_089100_020 Hb_000191_020--Hb_089100_020 Hb_024714_060 Hb_024714_060 Hb_000191_020--Hb_024714_060 Hb_000896_120 Hb_000896_120 Hb_000191_020--Hb_000896_120 Hb_001604_030 Hb_001604_030 Hb_000191_020--Hb_001604_030 Hb_001268_080 Hb_001268_080 Hb_000191_020--Hb_001268_080 Hb_000141_020--Hb_003504_020 Hb_000125_030 Hb_000125_030 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_000141_020--Hb_001956_070 Hb_000141_020--Hb_001159_080 Hb_000562_040 Hb_000562_040 Hb_000784_030--Hb_000562_040 Hb_001135_210 Hb_001135_210 Hb_000784_030--Hb_001135_210 Hb_000836_130 Hb_000836_130 Hb_000784_030--Hb_000836_130 Hb_001232_140 Hb_001232_140 Hb_000784_030--Hb_001232_140 Hb_010931_050 Hb_010931_050 Hb_000784_030--Hb_010931_050 Hb_003581_260 Hb_003581_260 Hb_000784_030--Hb_003581_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120371 0.0658415 0.167626 0.1583 0 0.144587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.45103 0.551812 0.871099 0.0792361 0

CAGE analysis