Hb_006210_020

Information

Type -
Description -
Location Contig6210: 36487-39512
Sequence    

Annotation

kegg
ID rcu:RCOM_1618760
description hypothetical protein
nr
ID XP_012092927.1
description PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
swissprot
ID Q9FN48
description Calcium sensing receptor, chloroplastic OS=Arabidopsis thaliana GN=CAS PE=1 SV=1
trembl
ID A0A067JJ99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05829 PE=4 SV=1
Gene Ontology
ID GO:0005739
description calcium sensing chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006210_020 0.0 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
2 Hb_000098_150 0.1309867072 - - DNA helicase hus2, putative [Ricinus communis]
3 Hb_002960_090 0.1416398183 - - protein with unknown function [Ricinus communis]
4 Hb_004108_210 0.143202553 - - phenazine biosynthesis protein, putative [Ricinus communis]
5 Hb_007741_130 0.1543656004 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
6 Hb_002194_050 0.1573095719 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
7 Hb_004117_190 0.159528674 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
8 Hb_001863_160 0.1605741748 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
9 Hb_005245_120 0.1621098419 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_004712_190 0.1629907946 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
11 Hb_100790_010 0.1635825624 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001396_210 0.1647369574 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000984_260 0.1654980919 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
14 Hb_009486_210 0.1663571669 - - -
15 Hb_101146_010 0.1664278474 - - PREDICTED: peregrin-like [Jatropha curcas]
16 Hb_170098_010 0.1674667146 - - PREDICTED: cullin-1 [Jatropha curcas]
17 Hb_146255_020 0.1681581144 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
18 Hb_000189_130 0.1692091483 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
19 Hb_000363_350 0.1700780152 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
20 Hb_004225_060 0.1719656569 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]

Gene co-expression network

sample Hb_006210_020 Hb_006210_020 Hb_000098_150 Hb_000098_150 Hb_006210_020--Hb_000098_150 Hb_002960_090 Hb_002960_090 Hb_006210_020--Hb_002960_090 Hb_004108_210 Hb_004108_210 Hb_006210_020--Hb_004108_210 Hb_007741_130 Hb_007741_130 Hb_006210_020--Hb_007741_130 Hb_002194_050 Hb_002194_050 Hb_006210_020--Hb_002194_050 Hb_004117_190 Hb_004117_190 Hb_006210_020--Hb_004117_190 Hb_000098_150--Hb_004108_210 Hb_001863_160 Hb_001863_160 Hb_000098_150--Hb_001863_160 Hb_005144_210 Hb_005144_210 Hb_000098_150--Hb_005144_210 Hb_001221_580 Hb_001221_580 Hb_000098_150--Hb_001221_580 Hb_004712_190 Hb_004712_190 Hb_000098_150--Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_000098_150--Hb_014231_020 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_101146_010 Hb_101146_010 Hb_002960_090--Hb_101146_010 Hb_000984_260 Hb_000984_260 Hb_002960_090--Hb_000984_260 Hb_002627_020 Hb_002627_020 Hb_002960_090--Hb_002627_020 Hb_005701_110 Hb_005701_110 Hb_002960_090--Hb_005701_110 Hb_004108_210--Hb_005144_210 Hb_004108_210--Hb_001221_580 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_005903_020 Hb_005903_020 Hb_004108_210--Hb_005903_020 Hb_004108_210--Hb_004712_190 Hb_001191_080 Hb_001191_080 Hb_007741_130--Hb_001191_080 Hb_001633_090 Hb_001633_090 Hb_007741_130--Hb_001633_090 Hb_007850_030 Hb_007850_030 Hb_007741_130--Hb_007850_030 Hb_005245_120 Hb_005245_120 Hb_007741_130--Hb_005245_120 Hb_007741_130--Hb_001863_160 Hb_053709_050 Hb_053709_050 Hb_007741_130--Hb_053709_050 Hb_008375_030 Hb_008375_030 Hb_002194_050--Hb_008375_030 Hb_009771_060 Hb_009771_060 Hb_002194_050--Hb_009771_060 Hb_004129_090 Hb_004129_090 Hb_002194_050--Hb_004129_090 Hb_001776_210 Hb_001776_210 Hb_002194_050--Hb_001776_210 Hb_004994_080 Hb_004994_080 Hb_002194_050--Hb_004994_080 Hb_002876_300 Hb_002876_300 Hb_002194_050--Hb_002876_300 Hb_000580_100 Hb_000580_100 Hb_004117_190--Hb_000580_100 Hb_004117_190--Hb_007741_130 Hb_005054_220 Hb_005054_220 Hb_004117_190--Hb_005054_220 Hb_004117_190--Hb_101146_010 Hb_003540_050 Hb_003540_050 Hb_004117_190--Hb_003540_050 Hb_001268_340 Hb_001268_340 Hb_004117_190--Hb_001268_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.663739 1.60811 4.1713 1.40074 0.396954 0.315397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2141 1.91011 0.229587 1.52951 0.830212

CAGE analysis