Hb_006210_030

Information

Type -
Description -
Location Contig6210: 43637-44159
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0043231
description calcium sensing chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006210_030 0.0 - - -
2 Hb_000656_190 0.2151806223 - - PREDICTED: probable nucleoside diphosphate kinase 5 [Jatropha curcas]
3 Hb_005686_120 0.2415765033 - - -
4 Hb_101146_010 0.2453628132 - - PREDICTED: peregrin-like [Jatropha curcas]
5 Hb_004218_120 0.2475564688 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
6 Hb_172632_050 0.2553456521 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
7 Hb_012807_130 0.2604530945 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
8 Hb_004117_190 0.2609131073 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
9 Hb_000776_060 0.2629197844 - - histone H4 [Zea mays]
10 Hb_080332_010 0.2638510096 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
11 Hb_005054_220 0.2657774482 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
12 Hb_005000_250 0.266298522 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
13 Hb_000007_200 0.2670170626 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
14 Hb_004449_180 0.2670414537 - - PREDICTED: SAC3 family protein 1 [Jatropha curcas]
15 Hb_002498_260 0.2673135031 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
16 Hb_011344_200 0.268221999 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
17 Hb_000062_660 0.2699349071 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
18 Hb_000580_100 0.2711234133 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
19 Hb_000086_320 0.2723907492 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
20 Hb_085972_010 0.2729241644 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]

Gene co-expression network

sample Hb_006210_030 Hb_006210_030 Hb_000656_190 Hb_000656_190 Hb_006210_030--Hb_000656_190 Hb_005686_120 Hb_005686_120 Hb_006210_030--Hb_005686_120 Hb_101146_010 Hb_101146_010 Hb_006210_030--Hb_101146_010 Hb_004218_120 Hb_004218_120 Hb_006210_030--Hb_004218_120 Hb_172632_050 Hb_172632_050 Hb_006210_030--Hb_172632_050 Hb_012807_130 Hb_012807_130 Hb_006210_030--Hb_012807_130 Hb_000889_010 Hb_000889_010 Hb_000656_190--Hb_000889_010 Hb_000913_040 Hb_000913_040 Hb_000656_190--Hb_000913_040 Hb_004449_180 Hb_004449_180 Hb_000656_190--Hb_004449_180 Hb_001208_040 Hb_001208_040 Hb_000656_190--Hb_001208_040 Hb_007390_020 Hb_007390_020 Hb_000656_190--Hb_007390_020 Hb_002477_010 Hb_002477_010 Hb_000656_190--Hb_002477_010 Hb_001829_040 Hb_001829_040 Hb_005686_120--Hb_001829_040 Hb_011671_480 Hb_011671_480 Hb_005686_120--Hb_011671_480 Hb_085972_010 Hb_085972_010 Hb_005686_120--Hb_085972_010 Hb_130613_010 Hb_130613_010 Hb_005686_120--Hb_130613_010 Hb_000260_720 Hb_000260_720 Hb_005686_120--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_005686_120--Hb_002983_080 Hb_004117_190 Hb_004117_190 Hb_101146_010--Hb_004117_190 Hb_002960_090 Hb_002960_090 Hb_101146_010--Hb_002960_090 Hb_000757_130 Hb_000757_130 Hb_101146_010--Hb_000757_130 Hb_007741_130 Hb_007741_130 Hb_101146_010--Hb_007741_130 Hb_001114_170 Hb_001114_170 Hb_101146_010--Hb_001114_170 Hb_000046_310 Hb_000046_310 Hb_101146_010--Hb_000046_310 Hb_000203_270 Hb_000203_270 Hb_004218_120--Hb_000203_270 Hb_002325_060 Hb_002325_060 Hb_004218_120--Hb_002325_060 Hb_001135_030 Hb_001135_030 Hb_004218_120--Hb_001135_030 Hb_002849_070 Hb_002849_070 Hb_004218_120--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_004218_120--Hb_000200_170 Hb_002876_210 Hb_002876_210 Hb_004218_120--Hb_002876_210 Hb_001728_020 Hb_001728_020 Hb_172632_050--Hb_001728_020 Hb_006060_020 Hb_006060_020 Hb_172632_050--Hb_006060_020 Hb_006643_020 Hb_006643_020 Hb_172632_050--Hb_006643_020 Hb_000529_280 Hb_000529_280 Hb_172632_050--Hb_000529_280 Hb_172632_050--Hb_004449_180 Hb_000139_470 Hb_000139_470 Hb_172632_050--Hb_000139_470 Hb_000007_200 Hb_000007_200 Hb_012807_130--Hb_000007_200 Hb_007590_090 Hb_007590_090 Hb_012807_130--Hb_007590_090 Hb_004007_110 Hb_004007_110 Hb_012807_130--Hb_004007_110 Hb_000648_050 Hb_000648_050 Hb_012807_130--Hb_000648_050 Hb_001998_200 Hb_001998_200 Hb_012807_130--Hb_001998_200 Hb_000645_200 Hb_000645_200 Hb_012807_130--Hb_000645_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.670233 0.853549 1.61677 0.0758094 0.459764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06257 0.556399 0 0.471625 0.249447

CAGE analysis