Hb_006230_040

Information

Type -
Description -
Location Contig6230: 67798-71499
Sequence    

Annotation

kegg
ID rcu:RCOM_0069260
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002533407.1
description kinase, putative [Ricinus communis]
swissprot
ID Q8LST2
description Probable serine/threonine-protein kinase WNK7 OS=Arabidopsis thaliana GN=WNK7 PE=2 SV=1
trembl
ID B9T588
description Kinase, putative OS=Ricinus communis GN=RCOM_0069260 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable serine threonine-protein kinase wnk6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006230_040 0.0 - - kinase, putative [Ricinus communis]
2 Hb_171619_010 0.2034698372 - - protein binding protein, putative [Ricinus communis]
3 Hb_124961_010 0.2119822477 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
4 Hb_005155_020 0.2138629609 - - -
5 Hb_170532_010 0.2196995707 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
6 Hb_004994_130 0.2206056197 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
7 Hb_004570_050 0.2227767907 - - kinase, putative [Ricinus communis]
8 Hb_000160_150 0.2229114355 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
9 Hb_005517_010 0.2250040687 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
10 Hb_036693_010 0.232146561 - - -
11 Hb_055339_010 0.2366200892 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
12 Hb_012107_070 0.2385089165 - - -
13 Hb_010315_070 0.242402682 - - -
14 Hb_000260_140 0.2469348576 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
15 Hb_005883_040 0.2482047832 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
16 Hb_001916_060 0.2573069894 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
17 Hb_002686_330 0.2626092771 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
18 Hb_034667_020 0.2626833507 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002708_020 0.2636844704 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
20 Hb_002783_020 0.2640091962 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_006230_040 Hb_006230_040 Hb_171619_010 Hb_171619_010 Hb_006230_040--Hb_171619_010 Hb_124961_010 Hb_124961_010 Hb_006230_040--Hb_124961_010 Hb_005155_020 Hb_005155_020 Hb_006230_040--Hb_005155_020 Hb_170532_010 Hb_170532_010 Hb_006230_040--Hb_170532_010 Hb_004994_130 Hb_004994_130 Hb_006230_040--Hb_004994_130 Hb_004570_050 Hb_004570_050 Hb_006230_040--Hb_004570_050 Hb_171619_010--Hb_124961_010 Hb_171619_010--Hb_170532_010 Hb_000160_150 Hb_000160_150 Hb_171619_010--Hb_000160_150 Hb_003297_020 Hb_003297_020 Hb_171619_010--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_171619_010--Hb_101020_010 Hb_124961_010--Hb_170532_010 Hb_124961_010--Hb_004570_050 Hb_124961_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_124961_010--Hb_007136_020 Hb_124961_010--Hb_101020_010 Hb_000169_190 Hb_000169_190 Hb_005155_020--Hb_000169_190 Hb_036693_010 Hb_036693_010 Hb_005155_020--Hb_036693_010 Hb_005517_010 Hb_005517_010 Hb_005155_020--Hb_005517_010 Hb_000099_090 Hb_000099_090 Hb_005155_020--Hb_000099_090 Hb_005155_020--Hb_004570_050 Hb_012184_050 Hb_012184_050 Hb_005155_020--Hb_012184_050 Hb_170532_010--Hb_004570_050 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_010315_070 Hb_010315_070 Hb_004994_130--Hb_010315_070 Hb_000181_410 Hb_000181_410 Hb_004994_130--Hb_000181_410 Hb_163508_010 Hb_163508_010 Hb_004994_130--Hb_163508_010 Hb_000189_390 Hb_000189_390 Hb_004994_130--Hb_000189_390 Hb_007603_020 Hb_007603_020 Hb_004994_130--Hb_007603_020 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42336 2.30786 7.1339 0.515834 3.347 5.52537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0672203 0.0705214 0.23407 0.32263 0

CAGE analysis