Hb_006249_010

Information

Type -
Description -
Location Contig6249: 51187-51528
Sequence    

Annotation

kegg
ID rcu:RCOM_1837490
description RALFL33, putative
nr
ID KDP32602.1
description hypothetical protein JCGZ_13152 [Jatropha curcas]
swissprot
ID O23262
description Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
trembl
ID A0A067K901
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13152 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006249_010 0.0 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
2 Hb_001634_050 0.0536184133 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
3 Hb_000318_500 0.0550231993 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000107_240 0.0576290729 - - organic anion transporter, putative [Ricinus communis]
5 Hb_006570_170 0.0589980004 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
6 Hb_103468_010 0.0675403708 - - protein binding protein, putative [Ricinus communis]
7 Hb_000868_020 0.0684694136 - - -
8 Hb_012180_070 0.0708209068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000307_160 0.071251642 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
10 Hb_153544_020 0.0714681894 transcription factor TF Family: TCP PREDICTED: transcription factor TCP12 [Jatropha curcas]
11 Hb_010327_060 0.0717542844 - - hypothetical protein B456_001G246300 [Gossypium raimondii]
12 Hb_000816_090 0.0743320509 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
13 Hb_010833_010 0.075305729 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
14 Hb_003060_020 0.0763159073 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_002073_210 0.077181412 - - conserved hypothetical protein [Ricinus communis]
16 Hb_022250_140 0.0787104064 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
17 Hb_005396_020 0.0798992901 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
18 Hb_000521_030 0.0845235471 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
19 Hb_000028_090 0.0878374912 - - PREDICTED: uncharacterized protein LOC105135810 [Populus euphratica]
20 Hb_000997_220 0.0888977628 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]

Gene co-expression network

sample Hb_006249_010 Hb_006249_010 Hb_001634_050 Hb_001634_050 Hb_006249_010--Hb_001634_050 Hb_000318_500 Hb_000318_500 Hb_006249_010--Hb_000318_500 Hb_000107_240 Hb_000107_240 Hb_006249_010--Hb_000107_240 Hb_006570_170 Hb_006570_170 Hb_006249_010--Hb_006570_170 Hb_103468_010 Hb_103468_010 Hb_006249_010--Hb_103468_010 Hb_000868_020 Hb_000868_020 Hb_006249_010--Hb_000868_020 Hb_001634_050--Hb_006570_170 Hb_005396_020 Hb_005396_020 Hb_001634_050--Hb_005396_020 Hb_012180_070 Hb_012180_070 Hb_001634_050--Hb_012180_070 Hb_001634_050--Hb_000107_240 Hb_022250_140 Hb_022250_140 Hb_001634_050--Hb_022250_140 Hb_004884_040 Hb_004884_040 Hb_000318_500--Hb_004884_040 Hb_000483_340 Hb_000483_340 Hb_000318_500--Hb_000483_340 Hb_002734_020 Hb_002734_020 Hb_000318_500--Hb_002734_020 Hb_000816_090 Hb_000816_090 Hb_000318_500--Hb_000816_090 Hb_000327_350 Hb_000327_350 Hb_000318_500--Hb_000327_350 Hb_000307_160 Hb_000307_160 Hb_000107_240--Hb_000307_160 Hb_000107_240--Hb_000868_020 Hb_000107_240--Hb_012180_070 Hb_001401_130 Hb_001401_130 Hb_000107_240--Hb_001401_130 Hb_006570_170--Hb_022250_140 Hb_006570_170--Hb_000816_090 Hb_006570_170--Hb_005396_020 Hb_006570_170--Hb_012180_070 Hb_003060_020 Hb_003060_020 Hb_103468_010--Hb_003060_020 Hb_014834_100 Hb_014834_100 Hb_103468_010--Hb_014834_100 Hb_027577_010 Hb_027577_010 Hb_103468_010--Hb_027577_010 Hb_103468_010--Hb_000868_020 Hb_180518_010 Hb_180518_010 Hb_103468_010--Hb_180518_010 Hb_010327_060 Hb_010327_060 Hb_000868_020--Hb_010327_060 Hb_000028_090 Hb_000028_090 Hb_000868_020--Hb_000028_090 Hb_002757_040 Hb_002757_040 Hb_000868_020--Hb_002757_040 Hb_000868_020--Hb_000307_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.126477 0.876623 20.7393 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.49934

CAGE analysis