Hb_006252_020

Information

Type -
Description -
Location Contig6252: 18575-35222
Sequence    

Annotation

kegg
ID rcu:RCOM_1028510
description heat shock protein 70 (HSP70)-interacting protein, putative
nr
ID XP_012077590.1
description PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
swissprot
ID Q93YR3
description FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1
trembl
ID A0A067LLL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17262 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51648: 18612-35211 , PASA_asmbl_51649: 30107-35117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006252_020 0.0 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
2 Hb_002174_020 0.049600038 - - ring finger protein, putative [Ricinus communis]
3 Hb_004659_080 0.0522972964 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
4 Hb_003044_020 0.0560545441 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
5 Hb_004128_050 0.0572648279 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
6 Hb_001454_280 0.058025269 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
7 Hb_008112_030 0.0590488028 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007676_100 0.0593649131 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
9 Hb_000510_310 0.0607053446 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
10 Hb_001417_050 0.0622319057 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
11 Hb_000922_370 0.0629245051 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
12 Hb_000046_010 0.0631394299 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
13 Hb_000160_290 0.0636718851 - - unnamed protein product [Vitis vinifera]
14 Hb_000768_070 0.0638784843 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
15 Hb_002615_090 0.0646612497 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
16 Hb_002329_040 0.0654647681 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
17 Hb_002107_070 0.0660237547 - - hypothetical protein RCOM_1598630 [Ricinus communis]
18 Hb_001718_090 0.0667669037 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
19 Hb_007635_030 0.0691481668 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
20 Hb_003124_130 0.070144152 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006252_020 Hb_006252_020 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_002174_020--Hb_008112_030 Hb_002174_020--Hb_001454_280 Hb_000160_290 Hb_000160_290 Hb_002174_020--Hb_000160_290 Hb_005731_090 Hb_005731_090 Hb_002174_020--Hb_005731_090 Hb_007635_030 Hb_007635_030 Hb_002174_020--Hb_007635_030 Hb_007676_100 Hb_007676_100 Hb_004659_080--Hb_007676_100 Hb_157966_010 Hb_157966_010 Hb_004659_080--Hb_157966_010 Hb_000622_250 Hb_000622_250 Hb_004659_080--Hb_000622_250 Hb_001221_160 Hb_001221_160 Hb_004659_080--Hb_001221_160 Hb_002392_030 Hb_002392_030 Hb_004659_080--Hb_002392_030 Hb_000922_370 Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_005489_080 Hb_005489_080 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_001140_350 Hb_001140_350 Hb_001454_280--Hb_001140_350 Hb_001454_280--Hb_007635_030 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_008112_030--Hb_007635_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_008112_030--Hb_005731_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.85732 8.32628 3.39528 3.83568 8.89355 9.11107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92321 3.51307 4.11578 5.60747 3.85891

CAGE analysis