Hb_006252_040

Information

Type -
Description -
Location Contig6252: 56313-67343
Sequence    

Annotation

kegg
ID rcu:RCOM_1028560
description queuine tRNA-ribosyltransferase, putative (EC:2.4.2.29)
nr
ID XP_002526400.1
description queuine tRNA-ribosyltransferase, putative [Ricinus communis]
swissprot
ID B8ZXI1
description Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Mus musculus GN=Qtrtd1 PE=1 SV=2
trembl
ID B9SK81
description Queuine tRNA-ribosyltransferase, putative OS=Ricinus communis GN=RCOM_1028560 PE=4 SV=1
Gene Ontology
ID GO:0016757
description queuine trna-ribosyltransferase subunit qtrtd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51652: 56285-67258 , PASA_asmbl_51653: 56285-67258 , PASA_asmbl_51654: 56528-67258
cDNA
(Sanger)
(ID:Location)		 021_A20.ab1: 58650-67258

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006252_040 0.0 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
2 Hb_000820_170 0.0473316812 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
3 Hb_023386_040 0.0546443764 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
4 Hb_003952_070 0.0570848097 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000538_100 0.058682681 - - conserved hypothetical protein [Ricinus communis]
6 Hb_016898_010 0.0587994803 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
7 Hb_004881_020 0.0594509871 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
8 Hb_007317_110 0.0596441849 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
9 Hb_000025_110 0.0617285802 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
10 Hb_000212_240 0.0634544553 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_008159_020 0.0636337953 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
12 Hb_004370_030 0.0637414495 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
13 Hb_003428_070 0.0639195615 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
14 Hb_000567_050 0.066305269 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
15 Hb_001488_410 0.0670266975 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
16 Hb_000879_200 0.0679072934 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
17 Hb_002716_130 0.0680919141 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
18 Hb_003362_070 0.0682613757 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
19 Hb_002045_240 0.0695574725 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
20 Hb_004102_140 0.0696080791 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006252_040 Hb_006252_040 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_003952_070 Hb_003952_070 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_003428_070 Hb_003428_070 Hb_000820_170--Hb_003428_070 Hb_000820_170--Hb_016898_010 Hb_005731_030 Hb_005731_030 Hb_000820_170--Hb_005731_030 Hb_000101_240 Hb_000101_240 Hb_000820_170--Hb_000101_240 Hb_123352_020 Hb_123352_020 Hb_000820_170--Hb_123352_020 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_023386_040--Hb_003952_070 Hb_003952_070--Hb_004881_020 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_004881_020--Hb_007594_130 Hb_000212_240 Hb_000212_240 Hb_004881_020--Hb_000212_240 Hb_004881_020--Hb_103012_010 Hb_002671_100 Hb_002671_100 Hb_004881_020--Hb_002671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7677 8.67692 7.01773 7.79793 13.3539 19.9366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7066 8.7115 8.50939 8.94136 6.68059

CAGE analysis