Hb_006256_030

Information

Type -
Description -
Location Contig6256: 57628-62568
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11260g
description hypothetical protein
nr
ID XP_012081898.1
description PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
swissprot
ID Q9LEQ3
description Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=3 SV=1
trembl
ID U5FVU6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11260g PE=4 SV=1
Gene Ontology
ID GO:0016324
description cyclic nucleotide-gated ion channel 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006256_030 0.0 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
2 Hb_163256_020 0.0731589803 - - fructokinase [Manihot esculenta]
3 Hb_002060_010 0.0849010823 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
4 Hb_022318_020 0.0902569185 - - hypothetical protein JCGZ_00541 [Jatropha curcas]
5 Hb_158445_010 0.0920235188 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
6 Hb_001718_030 0.093381661 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
7 Hb_002260_010 0.0938577889 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
8 Hb_000424_200 0.0973311458 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
9 Hb_000696_290 0.09951682 - - PREDICTED: UPF0664 stress-induced protein C29B12.11c [Jatropha curcas]
10 Hb_006355_040 0.1010581191 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
11 Hb_003020_150 0.1042871704 - - tropinone reductase, putative [Ricinus communis]
12 Hb_003929_150 0.1046917057 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
13 Hb_004324_090 0.1062588443 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
14 Hb_000571_020 0.1064335058 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
15 Hb_007037_020 0.1073427246 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
16 Hb_002239_050 0.1083423741 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
17 Hb_005843_140 0.1092460633 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
18 Hb_002016_080 0.1100019903 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
19 Hb_001188_030 0.1100177085 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
20 Hb_017987_050 0.1101245857 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_006256_030 Hb_006256_030 Hb_163256_020 Hb_163256_020 Hb_006256_030--Hb_163256_020 Hb_002060_010 Hb_002060_010 Hb_006256_030--Hb_002060_010 Hb_022318_020 Hb_022318_020 Hb_006256_030--Hb_022318_020 Hb_158445_010 Hb_158445_010 Hb_006256_030--Hb_158445_010 Hb_001718_030 Hb_001718_030 Hb_006256_030--Hb_001718_030 Hb_002260_010 Hb_002260_010 Hb_006256_030--Hb_002260_010 Hb_004324_090 Hb_004324_090 Hb_163256_020--Hb_004324_090 Hb_000465_300 Hb_000465_300 Hb_163256_020--Hb_000465_300 Hb_163256_020--Hb_158445_010 Hb_163256_020--Hb_022318_020 Hb_000310_020 Hb_000310_020 Hb_163256_020--Hb_000310_020 Hb_002060_010--Hb_001718_030 Hb_001188_030 Hb_001188_030 Hb_002060_010--Hb_001188_030 Hb_098315_020 Hb_098315_020 Hb_002060_010--Hb_098315_020 Hb_006355_040 Hb_006355_040 Hb_002060_010--Hb_006355_040 Hb_000327_380 Hb_000327_380 Hb_002060_010--Hb_000327_380 Hb_002701_010 Hb_002701_010 Hb_022318_020--Hb_002701_010 Hb_000448_050 Hb_000448_050 Hb_022318_020--Hb_000448_050 Hb_001648_030 Hb_001648_030 Hb_022318_020--Hb_001648_030 Hb_001016_100 Hb_001016_100 Hb_022318_020--Hb_001016_100 Hb_000327_060 Hb_000327_060 Hb_158445_010--Hb_000327_060 Hb_158445_010--Hb_004324_090 Hb_005162_060 Hb_005162_060 Hb_158445_010--Hb_005162_060 Hb_004143_150 Hb_004143_150 Hb_158445_010--Hb_004143_150 Hb_158445_010--Hb_000310_020 Hb_001718_030--Hb_001188_030 Hb_001718_030--Hb_006355_040 Hb_001431_080 Hb_001431_080 Hb_001718_030--Hb_001431_080 Hb_000676_390 Hb_000676_390 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040 Hb_024074_010 Hb_024074_010 Hb_002260_010--Hb_024074_010 Hb_001252_220 Hb_001252_220 Hb_002260_010--Hb_001252_220 Hb_003020_150 Hb_003020_150 Hb_002260_010--Hb_003020_150 Hb_000731_190 Hb_000731_190 Hb_002260_010--Hb_000731_190 Hb_001493_050 Hb_001493_050 Hb_002260_010--Hb_001493_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.355235 1.11041 1.18284 1.19048 0.613668 0.375394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32413 3.00989 1.44502 0.986342 0.945388

CAGE analysis