Hb_006261_050

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig6261: 61494-64816
Sequence    

Annotation

kegg
ID rcu:RCOM_0644150
description DNA-binding protein MNB1B, putative
nr
ID XP_002528104.1
description DNA-binding protein MNB1B, putative [Ricinus communis]
swissprot
ID O49595
description High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1
trembl
ID B9SQ35
description DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0644150 PE=4 SV=1
Gene Ontology
ID GO:0003677
description high mobility group b1 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51673: 61491-64816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006261_050 0.0 transcription factor TF Family: C2C2-YABBY DNA-binding protein MNB1B, putative [Ricinus communis]
2 Hb_004531_150 0.0815830731 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
3 Hb_001541_150 0.0974159111 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004531_100 0.0993906372 - - PREDICTED: zinc phosphodiesterase ELAC protein 2 isoform X1 [Jatropha curcas]
5 Hb_000731_200 0.099860703 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
6 Hb_007597_010 0.1006893134 - - hypothetical protein B456_010G072300 [Gossypium raimondii]
7 Hb_000069_610 0.1008394169 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
8 Hb_003777_030 0.1011490006 - - Exocyst complex component, putative [Ricinus communis]
9 Hb_016461_020 0.1028365349 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010315_020 0.1083546049 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]
11 Hb_005305_100 0.108621368 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_000336_020 0.1096410485 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
13 Hb_000270_190 0.1097583646 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
14 Hb_005381_020 0.1103180843 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
15 Hb_002045_170 0.1112298942 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
16 Hb_002272_240 0.1119873453 - - catalytic, putative [Ricinus communis]
17 Hb_000258_420 0.1139550162 - - sucrose transporter 2A [Hevea brasiliensis]
18 Hb_000212_420 0.1143940997 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
19 Hb_088584_010 0.1148416924 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
20 Hb_023344_140 0.1149087926 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]

Gene co-expression network

sample Hb_006261_050 Hb_006261_050 Hb_004531_150 Hb_004531_150 Hb_006261_050--Hb_004531_150 Hb_001541_150 Hb_001541_150 Hb_006261_050--Hb_001541_150 Hb_004531_100 Hb_004531_100 Hb_006261_050--Hb_004531_100 Hb_000731_200 Hb_000731_200 Hb_006261_050--Hb_000731_200 Hb_007597_010 Hb_007597_010 Hb_006261_050--Hb_007597_010 Hb_000069_610 Hb_000069_610 Hb_006261_050--Hb_000069_610 Hb_001504_010 Hb_001504_010 Hb_004531_150--Hb_001504_010 Hb_005305_100 Hb_005305_100 Hb_004531_150--Hb_005305_100 Hb_003506_030 Hb_003506_030 Hb_004531_150--Hb_003506_030 Hb_004531_150--Hb_001541_150 Hb_021596_020 Hb_021596_020 Hb_004531_150--Hb_021596_020 Hb_000300_030 Hb_000300_030 Hb_001541_150--Hb_000300_030 Hb_001541_150--Hb_004531_100 Hb_006663_060 Hb_006663_060 Hb_001541_150--Hb_006663_060 Hb_000270_190 Hb_000270_190 Hb_001541_150--Hb_000270_190 Hb_022250_010 Hb_022250_010 Hb_001541_150--Hb_022250_010 Hb_000336_020 Hb_000336_020 Hb_001541_150--Hb_000336_020 Hb_001776_020 Hb_001776_020 Hb_004531_100--Hb_001776_020 Hb_010315_020 Hb_010315_020 Hb_004531_100--Hb_010315_020 Hb_002883_030 Hb_002883_030 Hb_004531_100--Hb_002883_030 Hb_004531_100--Hb_000336_020 Hb_000212_120 Hb_000212_120 Hb_004531_100--Hb_000212_120 Hb_023344_150 Hb_023344_150 Hb_000731_200--Hb_023344_150 Hb_189216_010 Hb_189216_010 Hb_000731_200--Hb_189216_010 Hb_000731_200--Hb_004531_150 Hb_000567_230 Hb_000567_230 Hb_000731_200--Hb_000567_230 Hb_006970_050 Hb_006970_050 Hb_000731_200--Hb_006970_050 Hb_000120_810 Hb_000120_810 Hb_000731_200--Hb_000120_810 Hb_003929_070 Hb_003929_070 Hb_007597_010--Hb_003929_070 Hb_007597_010--Hb_000336_020 Hb_001677_200 Hb_001677_200 Hb_007597_010--Hb_001677_200 Hb_007248_030 Hb_007248_030 Hb_007597_010--Hb_007248_030 Hb_044486_020 Hb_044486_020 Hb_007597_010--Hb_044486_020 Hb_002326_040 Hb_002326_040 Hb_007597_010--Hb_002326_040 Hb_000788_030 Hb_000788_030 Hb_000069_610--Hb_000788_030 Hb_006846_170 Hb_006846_170 Hb_000069_610--Hb_006846_170 Hb_004705_160 Hb_004705_160 Hb_000069_610--Hb_004705_160 Hb_001478_040 Hb_001478_040 Hb_000069_610--Hb_001478_040 Hb_088584_010 Hb_088584_010 Hb_000069_610--Hb_088584_010 Hb_000748_090 Hb_000748_090 Hb_000069_610--Hb_000748_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.3508 86.2466 95.842 116.85 34.5174 55.3002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5177 54.0643 31.1433 49.953 94.939

CAGE analysis