Hb_006262_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig6262: 102511-103867
Sequence    

Annotation

kegg
ID rcu:RCOM_1326830
description transcription factor, putative
nr
ID XP_002520050.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9M126
description NAC domain-containing protein 69 OS=Arabidopsis thaliana GN=NAC69 PE=2 SV=1
trembl
ID B9S231
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1326830 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51676: 102420-103876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006262_030 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_002045_260 0.119861647 - - calmodulin, putative [Ricinus communis]
3 Hb_004703_010 0.1284293299 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
4 Hb_042098_010 0.1359064381 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
5 Hb_008080_030 0.1401292742 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
6 Hb_001454_290 0.1441723179 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
7 Hb_001634_030 0.1467426611 - - Receptor like protein 1, putative [Theobroma cacao]
8 Hb_001832_240 0.1579902499 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_000567_060 0.160071718 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
10 Hb_004551_050 0.1607838517 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
11 Hb_002157_100 0.1612693346 - - -
12 Hb_001532_060 0.1619273694 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_000723_050 0.1628904811 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
14 Hb_005628_050 0.1666368989 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
15 Hb_006294_030 0.1667361305 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_003881_020 0.1709816258 - - PREDICTED: stellacyanin-like [Jatropha curcas]
17 Hb_000501_110 0.1717676733 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
18 Hb_000656_120 0.1725900944 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
19 Hb_000018_090 0.1738763343 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002871_050 0.1743274314 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_006262_030 Hb_006262_030 Hb_002045_260 Hb_002045_260 Hb_006262_030--Hb_002045_260 Hb_004703_010 Hb_004703_010 Hb_006262_030--Hb_004703_010 Hb_042098_010 Hb_042098_010 Hb_006262_030--Hb_042098_010 Hb_008080_030 Hb_008080_030 Hb_006262_030--Hb_008080_030 Hb_001454_290 Hb_001454_290 Hb_006262_030--Hb_001454_290 Hb_001634_030 Hb_001634_030 Hb_006262_030--Hb_001634_030 Hb_002157_100 Hb_002157_100 Hb_002045_260--Hb_002157_100 Hb_002045_260--Hb_042098_010 Hb_000656_120 Hb_000656_120 Hb_002045_260--Hb_000656_120 Hb_002374_360 Hb_002374_360 Hb_002045_260--Hb_002374_360 Hb_007017_110 Hb_007017_110 Hb_002045_260--Hb_007017_110 Hb_001532_060 Hb_001532_060 Hb_004703_010--Hb_001532_060 Hb_004703_010--Hb_008080_030 Hb_003413_020 Hb_003413_020 Hb_004703_010--Hb_003413_020 Hb_002110_060 Hb_002110_060 Hb_004703_010--Hb_002110_060 Hb_004703_010--Hb_002157_100 Hb_001581_040 Hb_001581_040 Hb_042098_010--Hb_001581_040 Hb_042098_010--Hb_008080_030 Hb_005628_050 Hb_005628_050 Hb_042098_010--Hb_005628_050 Hb_000001_010 Hb_000001_010 Hb_042098_010--Hb_000001_010 Hb_002774_180 Hb_002774_180 Hb_042098_010--Hb_002774_180 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_008080_030--Hb_002157_100 Hb_000046_590 Hb_000046_590 Hb_008080_030--Hb_000046_590 Hb_008080_030--Hb_003413_020 Hb_002871_050 Hb_002871_050 Hb_001454_290--Hb_002871_050 Hb_005679_110 Hb_005679_110 Hb_001454_290--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001454_290--Hb_001345_020 Hb_005730_070 Hb_005730_070 Hb_001454_290--Hb_005730_070 Hb_001454_290--Hb_002110_060 Hb_000723_050 Hb_000723_050 Hb_001454_290--Hb_000723_050 Hb_006294_030 Hb_006294_030 Hb_001634_030--Hb_006294_030 Hb_004551_050 Hb_004551_050 Hb_001634_030--Hb_004551_050 Hb_137272_010 Hb_137272_010 Hb_001634_030--Hb_137272_010 Hb_000567_060 Hb_000567_060 Hb_001634_030--Hb_000567_060 Hb_068804_070 Hb_068804_070 Hb_001634_030--Hb_068804_070 Hb_003881_020 Hb_003881_020 Hb_001634_030--Hb_003881_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.43222 14.7246 3.32331 0.0196277 0.0184362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0958604 0.49008 0 8.52624 1.08309

CAGE analysis