Hb_006266_010

Information

Type -
Description -
Location Contig6266: 3066-4816
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_912978
description hypothetical protein
nr
ID CBI20581.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q55C57
description Probable serine/threonine-protein kinase glkA OS=Dictyostelium discoideum GN=glkA PE=3 SV=1
trembl
ID F6H367
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00320 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006266_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003592_060 0.0598061051 - - hypothetical protein F383_11017 [Gossypium arboreum]
3 Hb_005743_010 0.0798816568 - - RING/U-box superfamily protein, putative [Theobroma cacao]
4 Hb_009693_010 0.1000551906 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
5 Hb_006615_220 0.1002380635 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
6 Hb_137272_010 0.1093970521 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
7 Hb_068804_070 0.1166857624 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
8 Hb_001500_080 0.1192793826 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
9 Hb_000880_040 0.1209035595 - - -
10 Hb_009102_010 0.1220375489 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_007643_060 0.1227470376 - - -
12 Hb_000020_020 0.128360475 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
13 Hb_000934_240 0.1301636634 - - PREDICTED: peroxidase 13 [Jatropha curcas]
14 Hb_000018_120 0.1322150614 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_012691_010 0.1338172688 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
16 Hb_000941_010 0.1375416972 - - hypothetical protein RCOM_0504460 [Ricinus communis]
17 Hb_001186_120 0.1382275721 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
18 Hb_000189_160 0.140258361 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_000152_770 0.1437268247 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
20 Hb_004832_010 0.1441868436 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006266_010 Hb_006266_010 Hb_003592_060 Hb_003592_060 Hb_006266_010--Hb_003592_060 Hb_005743_010 Hb_005743_010 Hb_006266_010--Hb_005743_010 Hb_009693_010 Hb_009693_010 Hb_006266_010--Hb_009693_010 Hb_006615_220 Hb_006615_220 Hb_006266_010--Hb_006615_220 Hb_137272_010 Hb_137272_010 Hb_006266_010--Hb_137272_010 Hb_068804_070 Hb_068804_070 Hb_006266_010--Hb_068804_070 Hb_003592_060--Hb_005743_010 Hb_003592_060--Hb_068804_070 Hb_003592_060--Hb_009693_010 Hb_002217_060 Hb_002217_060 Hb_003592_060--Hb_002217_060 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120 Hb_005743_010--Hb_068804_070 Hb_005743_010--Hb_006615_220 Hb_007643_060 Hb_007643_060 Hb_005743_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_005743_010--Hb_007951_020 Hb_000880_040 Hb_000880_040 Hb_009693_010--Hb_000880_040 Hb_001500_080 Hb_001500_080 Hb_009693_010--Hb_001500_080 Hb_002851_070 Hb_002851_070 Hb_009693_010--Hb_002851_070 Hb_000365_440 Hb_000365_440 Hb_009693_010--Hb_000365_440 Hb_006615_220--Hb_007643_060 Hb_000035_150 Hb_000035_150 Hb_006615_220--Hb_000035_150 Hb_000343_010 Hb_000343_010 Hb_006615_220--Hb_000343_010 Hb_001310_060 Hb_001310_060 Hb_006615_220--Hb_001310_060 Hb_003881_020 Hb_003881_020 Hb_137272_010--Hb_003881_020 Hb_000567_060 Hb_000567_060 Hb_137272_010--Hb_000567_060 Hb_000018_090 Hb_000018_090 Hb_137272_010--Hb_000018_090 Hb_000482_070 Hb_000482_070 Hb_137272_010--Hb_000482_070 Hb_000189_160 Hb_000189_160 Hb_137272_010--Hb_000189_160 Hb_000471_030 Hb_000471_030 Hb_068804_070--Hb_000471_030 Hb_004316_080 Hb_004316_080 Hb_068804_070--Hb_004316_080 Hb_068804_070--Hb_002217_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.14672 40.8949 10.6244 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 17.3719 15.1711

CAGE analysis