Hb_006269_050

Information

Type -
Description -
Location Contig6269: 50985-53136
Sequence    

Annotation

kegg
ID pop:POPTR_0004s13450g
description POPTRDRAFT_858831; hypothetical protein
nr
ID XP_002305324.2
description hypothetical protein POPTR_0004s13450g [Populus trichocarpa]
swissprot
ID Q9LXG9
description Plant cysteine oxidase 1 OS=Arabidopsis thaliana GN=PCO1 PE=1 SV=1
trembl
ID B9H3X8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s13450g PE=4 SV=2
Gene Ontology
ID GO:0016702
description 2-aminoethanethiol dioxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006269_050 0.0 - - hypothetical protein POPTR_0004s13450g [Populus trichocarpa]
2 Hb_143766_050 0.1939718514 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
3 Hb_004871_040 0.1973122041 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
4 Hb_012627_030 0.1976676019 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
5 Hb_001545_140 0.1986992093 transcription factor TF Family: NAC -
6 Hb_003683_120 0.2019275142 - - conserved hypothetical protein [Ricinus communis]
7 Hb_182305_020 0.2022399661 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
8 Hb_000521_050 0.203731849 - - PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
9 Hb_001234_080 0.2046040095 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
10 Hb_008648_010 0.2050176962 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
11 Hb_004048_110 0.2061395234 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
12 Hb_019253_030 0.206279966 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
13 Hb_032258_030 0.2075794518 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
14 Hb_006816_220 0.2084967488 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
15 Hb_156947_010 0.2091562733 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
16 Hb_001629_110 0.2093880898 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
17 Hb_010261_060 0.2108038574 - - unnamed protein product [Coffea canephora]
18 Hb_002221_040 0.2115089433 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
19 Hb_000030_180 0.2120993406 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
20 Hb_002963_020 0.2123521121 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006269_050 Hb_006269_050 Hb_143766_050 Hb_143766_050 Hb_006269_050--Hb_143766_050 Hb_004871_040 Hb_004871_040 Hb_006269_050--Hb_004871_040 Hb_012627_030 Hb_012627_030 Hb_006269_050--Hb_012627_030 Hb_001545_140 Hb_001545_140 Hb_006269_050--Hb_001545_140 Hb_003683_120 Hb_003683_120 Hb_006269_050--Hb_003683_120 Hb_182305_020 Hb_182305_020 Hb_006269_050--Hb_182305_020 Hb_019253_030 Hb_019253_030 Hb_143766_050--Hb_019253_030 Hb_009686_030 Hb_009686_030 Hb_143766_050--Hb_009686_030 Hb_003734_140 Hb_003734_140 Hb_143766_050--Hb_003734_140 Hb_002259_070 Hb_002259_070 Hb_143766_050--Hb_002259_070 Hb_006031_020 Hb_006031_020 Hb_143766_050--Hb_006031_020 Hb_012753_160 Hb_012753_160 Hb_143766_050--Hb_012753_160 Hb_001117_090 Hb_001117_090 Hb_004871_040--Hb_001117_090 Hb_002798_020 Hb_002798_020 Hb_004871_040--Hb_002798_020 Hb_009421_040 Hb_009421_040 Hb_004871_040--Hb_009421_040 Hb_004800_120 Hb_004800_120 Hb_004871_040--Hb_004800_120 Hb_003581_100 Hb_003581_100 Hb_004871_040--Hb_003581_100 Hb_087749_010 Hb_087749_010 Hb_004871_040--Hb_087749_010 Hb_007811_030 Hb_007811_030 Hb_012627_030--Hb_007811_030 Hb_000300_160 Hb_000300_160 Hb_012627_030--Hb_000300_160 Hb_004369_020 Hb_004369_020 Hb_012627_030--Hb_004369_020 Hb_000046_320 Hb_000046_320 Hb_012627_030--Hb_000046_320 Hb_111985_050 Hb_111985_050 Hb_012627_030--Hb_111985_050 Hb_068804_100 Hb_068804_100 Hb_012627_030--Hb_068804_100 Hb_008878_030 Hb_008878_030 Hb_001545_140--Hb_008878_030 Hb_004048_110 Hb_004048_110 Hb_001545_140--Hb_004048_110 Hb_004837_140 Hb_004837_140 Hb_001545_140--Hb_004837_140 Hb_002097_110 Hb_002097_110 Hb_001545_140--Hb_002097_110 Hb_000189_620 Hb_000189_620 Hb_001545_140--Hb_000189_620 Hb_027472_180 Hb_027472_180 Hb_001545_140--Hb_027472_180 Hb_001427_200 Hb_001427_200 Hb_003683_120--Hb_001427_200 Hb_026549_040 Hb_026549_040 Hb_003683_120--Hb_026549_040 Hb_004934_110 Hb_004934_110 Hb_003683_120--Hb_004934_110 Hb_001292_020 Hb_001292_020 Hb_003683_120--Hb_001292_020 Hb_001246_060 Hb_001246_060 Hb_003683_120--Hb_001246_060 Hb_028486_030 Hb_028486_030 Hb_003683_120--Hb_028486_030 Hb_003528_060 Hb_003528_060 Hb_182305_020--Hb_003528_060 Hb_012573_070 Hb_012573_070 Hb_182305_020--Hb_012573_070 Hb_000000_170 Hb_000000_170 Hb_182305_020--Hb_000000_170 Hb_000545_150 Hb_000545_150 Hb_182305_020--Hb_000545_150 Hb_000510_110 Hb_000510_110 Hb_182305_020--Hb_000510_110 Hb_012022_120 Hb_012022_120 Hb_182305_020--Hb_012022_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.645443 0 0.0998201 0.270449 0.649543 0.31558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.443943 1.22163 0.313594 0.330477 0.579668

CAGE analysis