Hb_006274_030

Information

Type -
Description -
Location Contig6274: 26639-45540
Sequence    

Annotation

kegg
ID rcu:RCOM_1617450
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_002511967.1
description F-box and wd40 domain protein, putative [Ricinus communis]
swissprot
ID Q8RXA7
description DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1
trembl
ID B9RE28
description F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_1617450 PE=4 SV=1
Gene Ontology
ID GO:0005515
description stomatal cytokinesis-defective 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51725: 26630-68582 , PASA_asmbl_51726: 26667-68003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006274_030 0.0 - - F-box and wd40 domain protein, putative [Ricinus communis]
2 Hb_001366_180 0.048344956 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
3 Hb_000479_250 0.0654029453 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
4 Hb_001971_010 0.0738797438 - - F23N19.4 [Arabidopsis thaliana]
5 Hb_000053_020 0.0743581029 - - F-box and wd40 domain protein, putative [Ricinus communis]
6 Hb_006478_020 0.0747989171 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_002014_030 0.0755168016 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
8 Hb_002496_010 0.0758451798 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
9 Hb_000441_200 0.079392565 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
10 Hb_000696_330 0.0806943627 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
11 Hb_002811_130 0.0807947213 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
12 Hb_000289_110 0.0809364285 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
13 Hb_001189_070 0.0811018041 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
14 Hb_001369_750 0.0811741391 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
15 Hb_029510_050 0.0835958897 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
16 Hb_002289_080 0.0841709703 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
17 Hb_000254_090 0.0847708703 - - PREDICTED: la protein 2 [Jatropha curcas]
18 Hb_029879_070 0.0852924721 - - PREDICTED: phospholipase A I [Jatropha curcas]
19 Hb_003153_010 0.0856741837 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
20 Hb_005144_050 0.0861142581 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_006274_030 Hb_006274_030 Hb_001366_180 Hb_001366_180 Hb_006274_030--Hb_001366_180 Hb_000479_250 Hb_000479_250 Hb_006274_030--Hb_000479_250 Hb_001971_010 Hb_001971_010 Hb_006274_030--Hb_001971_010 Hb_000053_020 Hb_000053_020 Hb_006274_030--Hb_000053_020 Hb_006478_020 Hb_006478_020 Hb_006274_030--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_006274_030--Hb_002014_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_000289_110 Hb_000289_110 Hb_001366_180--Hb_000289_110 Hb_001366_180--Hb_000479_250 Hb_001366_180--Hb_006478_020 Hb_001366_180--Hb_002014_030 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_003768_030 Hb_003768_030 Hb_000053_020--Hb_003768_030 Hb_008453_030 Hb_008453_030 Hb_000053_020--Hb_008453_030 Hb_001386_040 Hb_001386_040 Hb_000053_020--Hb_001386_040 Hb_001189_070 Hb_001189_070 Hb_000053_020--Hb_001189_070 Hb_001489_090 Hb_001489_090 Hb_000053_020--Hb_001489_090 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_006478_020--Hb_000172_290 Hb_002014_030--Hb_000289_110 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_002811_130 Hb_002811_130 Hb_002014_030--Hb_002811_130 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02287 2.10761 3.37087 4.92098 3.11053 4.81852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56396 5.28866 4.23123 4.93126 6.7594

CAGE analysis