Hb_006274_040

Information

Type -
Description -
Location Contig6274: 56113-62323
Sequence    

Annotation

kegg
ID mdm:103420403
description myotubularin-related protein 5-like
nr
ID XP_011470710.1
description PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
swissprot
ID Q6NXD8
description DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2
trembl
ID A0A078IIB5
description BnaA06g03290D protein OS=Brassica napus GN=BnaA06g03290D PE=4 SV=1
Gene Ontology
ID GO:0080008
description denn domain and wd repeat-containing protein scd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51725: 26630-68582 , PASA_asmbl_51726: 26667-68003 , PASA_asmbl_51728: 57027-57471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006274_040 0.0 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
2 Hb_002200_040 0.1280781513 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
3 Hb_008447_030 0.1417290341 - - -
4 Hb_142328_010 0.1488901481 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
5 Hb_002079_050 0.1588247301 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
6 Hb_000586_030 0.1631511372 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
7 Hb_000168_010 0.1632105931 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
8 Hb_003606_060 0.1727500897 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
9 Hb_026745_020 0.1728325549 - - PREDICTED: rhodanese-like domain-containing protein 8, chloroplastic [Jatropha curcas]
10 Hb_002414_060 0.1745659338 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
11 Hb_050912_010 0.1747430599 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
12 Hb_000329_560 0.1755356632 - - conserved hypothetical protein [Ricinus communis]
13 Hb_099116_010 0.1755772318 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003030_030 0.1796159815 - - -
15 Hb_138475_010 0.1796953575 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
16 Hb_004303_040 0.1809312442 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
17 Hb_004445_040 0.1832860386 - - PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
18 Hb_026228_010 0.183949115 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001894_070 0.1850432371 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
20 Hb_004333_050 0.1854034567 - - -

Gene co-expression network

sample Hb_006274_040 Hb_006274_040 Hb_002200_040 Hb_002200_040 Hb_006274_040--Hb_002200_040 Hb_008447_030 Hb_008447_030 Hb_006274_040--Hb_008447_030 Hb_142328_010 Hb_142328_010 Hb_006274_040--Hb_142328_010 Hb_002079_050 Hb_002079_050 Hb_006274_040--Hb_002079_050 Hb_000586_030 Hb_000586_030 Hb_006274_040--Hb_000586_030 Hb_000168_010 Hb_000168_010 Hb_006274_040--Hb_000168_010 Hb_002200_040--Hb_002079_050 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_004303_040 Hb_004303_040 Hb_002200_040--Hb_004303_040 Hb_002200_040--Hb_008447_030 Hb_000656_090 Hb_000656_090 Hb_008447_030--Hb_000656_090 Hb_026745_020 Hb_026745_020 Hb_008447_030--Hb_026745_020 Hb_000160_160 Hb_000160_160 Hb_008447_030--Hb_000160_160 Hb_008447_040 Hb_008447_040 Hb_008447_030--Hb_008447_040 Hb_142328_010--Hb_002079_050 Hb_002079_030 Hb_002079_030 Hb_142328_010--Hb_002079_030 Hb_006810_030 Hb_006810_030 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010 Hb_002079_050--Hb_002079_030 Hb_150023_010 Hb_150023_010 Hb_002079_050--Hb_150023_010 Hb_002079_050--Hb_006810_030 Hb_002079_050--Hb_026745_020 Hb_000586_030--Hb_003606_060 Hb_038564_010 Hb_038564_010 Hb_000586_030--Hb_038564_010 Hb_000586_030--Hb_000168_010 Hb_003780_020 Hb_003780_020 Hb_000586_030--Hb_003780_020 Hb_012678_010 Hb_012678_010 Hb_000586_030--Hb_012678_010 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.97989 2.35475 2.58981 11.1225 0.899816 13.3899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40286 3.46022 3.26989 3.9107 8.56226

CAGE analysis