Hb_006274_050

Information

Type -
Description -
Location Contig6274: 63645-68596
Sequence    

Annotation

kegg
ID fve:101307503
description uncharacterized protein LOC101307503
nr
ID CAN64735.1
description hypothetical protein VITISV_022618 [Vitis vinifera]
swissprot
ID Q6NTN5
description Myotubularin-related protein 13 OS=Xenopus laevis GN=sbf2 PE=2 SV=1
trembl
ID A5AMT0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022618 PE=4 SV=1
Gene Ontology
ID GO:0080008
description f-box and wd40 domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51725: 26630-68582 , PASA_asmbl_51726: 26667-68003
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006274_050 0.0 - - hypothetical protein VITISV_022618 [Vitis vinifera]
2 Hb_000365_240 0.0959332994 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
3 Hb_003089_020 0.1002106788 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
4 Hb_000922_030 0.102684052 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
5 Hb_003467_030 0.1051259113 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
6 Hb_003994_110 0.1093416398 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
7 Hb_001435_030 0.1097774695 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
8 Hb_011386_020 0.1115997137 - - unnamed protein product [Vitis vinifera]
9 Hb_032920_050 0.11173677 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
10 Hb_002055_040 0.1125194461 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
11 Hb_000204_120 0.1142216154 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
12 Hb_007101_080 0.1153794522 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
13 Hb_004218_190 0.1197168868 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
14 Hb_012098_070 0.1229356997 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
15 Hb_003952_060 0.1233826112 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
16 Hb_135572_010 0.1244073464 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
17 Hb_000019_200 0.1260373264 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
18 Hb_003475_020 0.1277815544 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
19 Hb_000388_090 0.1302347867 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
20 Hb_005801_020 0.1305693623 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]

Gene co-expression network

sample Hb_006274_050 Hb_006274_050 Hb_000365_240 Hb_000365_240 Hb_006274_050--Hb_000365_240 Hb_003089_020 Hb_003089_020 Hb_006274_050--Hb_003089_020 Hb_000922_030 Hb_000922_030 Hb_006274_050--Hb_000922_030 Hb_003467_030 Hb_003467_030 Hb_006274_050--Hb_003467_030 Hb_003994_110 Hb_003994_110 Hb_006274_050--Hb_003994_110 Hb_001435_030 Hb_001435_030 Hb_006274_050--Hb_001435_030 Hb_002055_040 Hb_002055_040 Hb_000365_240--Hb_002055_040 Hb_001163_060 Hb_001163_060 Hb_000365_240--Hb_001163_060 Hb_000365_240--Hb_000922_030 Hb_001157_240 Hb_001157_240 Hb_000365_240--Hb_001157_240 Hb_002539_070 Hb_002539_070 Hb_000365_240--Hb_002539_070 Hb_004218_190 Hb_004218_190 Hb_000365_240--Hb_004218_190 Hb_002374_250 Hb_002374_250 Hb_003089_020--Hb_002374_250 Hb_012098_070 Hb_012098_070 Hb_003089_020--Hb_012098_070 Hb_003475_020 Hb_003475_020 Hb_003089_020--Hb_003475_020 Hb_000110_270 Hb_000110_270 Hb_003089_020--Hb_000110_270 Hb_000676_200 Hb_000676_200 Hb_003089_020--Hb_000676_200 Hb_000358_050 Hb_000358_050 Hb_000922_030--Hb_000358_050 Hb_002025_330 Hb_002025_330 Hb_000922_030--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_000922_030--Hb_135572_010 Hb_004143_160 Hb_004143_160 Hb_000922_030--Hb_004143_160 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090 Hb_007023_030 Hb_007023_030 Hb_003467_030--Hb_007023_030 Hb_002768_060 Hb_002768_060 Hb_003467_030--Hb_002768_060 Hb_000204_120 Hb_000204_120 Hb_003467_030--Hb_000204_120 Hb_003467_030--Hb_001435_030 Hb_003467_030--Hb_003994_110 Hb_011386_020 Hb_011386_020 Hb_003467_030--Hb_011386_020 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003994_110--Hb_003475_020 Hb_000613_110 Hb_000613_110 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_001824_090 Hb_001824_090 Hb_003994_110--Hb_001824_090 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_036790_080 Hb_036790_080 Hb_001435_030--Hb_036790_080 Hb_000261_060 Hb_000261_060 Hb_001435_030--Hb_000261_060 Hb_000027_190 Hb_000027_190 Hb_001435_030--Hb_000027_190 Hb_001435_030--Hb_002055_040 Hb_005253_030 Hb_005253_030 Hb_001435_030--Hb_005253_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52758 2.01392 2.52838 2.65912 1.33502 4.31097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.12311 1.86861 4.0254 4.3806 8.78538

CAGE analysis