Hb_006275_040

Information

Type -
Description -
Location Contig6275: 62336-67777
Sequence    

Annotation

kegg
ID rcu:RCOM_1596210
description vacuolar proton atpase, putative (EC:3.6.3.14)
nr
ID XP_012071960.1
description PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
swissprot
ID Q8W4S4
description V-type proton ATPase subunit a3 OS=Arabidopsis thaliana GN=VHA-a3 PE=1 SV=1
trembl
ID E6NU69
description V-type proton ATPase subunit a OS=Jatropha curcas GN=JHL18I08.13 PE=3 SV=1
Gene Ontology
ID GO:0033179
description v-type proton atpase subunit a3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006275_040 0.0 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
2 Hb_001300_060 0.0645210781 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
3 Hb_005144_140 0.0708703284 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003057_040 0.0818757464 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
5 Hb_000917_070 0.0845473381 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010308_010 0.0904369257 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
7 Hb_023714_010 0.0905758736 - - hypothetical protein B456_007G377100 [Gossypium raimondii]
8 Hb_004330_050 0.0911795511 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000496_080 0.0914239498 - - Proteinase inhibitor, putative [Ricinus communis]
10 Hb_000329_570 0.0967211351 - - -
11 Hb_020112_010 0.1073251685 - - acyltransferase, putative [Ricinus communis]
12 Hb_073870_010 0.1131904839 - - hypothetical protein RCOM_0725510 [Ricinus communis]
13 Hb_001404_060 0.1181488075 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_030088_010 0.1271636737 - - basic blue copper family protein [Populus trichocarpa]
15 Hb_004102_150 0.1299126621 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
16 Hb_006103_050 0.1321566005 - - -
17 Hb_001863_520 0.1347953513 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000935_060 0.1381559185 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
19 Hb_004785_150 0.1520432302 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
20 Hb_002413_030 0.1577531429 - - sulfate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_006275_040 Hb_006275_040 Hb_001300_060 Hb_001300_060 Hb_006275_040--Hb_001300_060 Hb_005144_140 Hb_005144_140 Hb_006275_040--Hb_005144_140 Hb_003057_040 Hb_003057_040 Hb_006275_040--Hb_003057_040 Hb_000917_070 Hb_000917_070 Hb_006275_040--Hb_000917_070 Hb_010308_010 Hb_010308_010 Hb_006275_040--Hb_010308_010 Hb_023714_010 Hb_023714_010 Hb_006275_040--Hb_023714_010 Hb_001300_060--Hb_010308_010 Hb_000496_080 Hb_000496_080 Hb_001300_060--Hb_000496_080 Hb_004330_050 Hb_004330_050 Hb_001300_060--Hb_004330_050 Hb_000329_570 Hb_000329_570 Hb_001300_060--Hb_000329_570 Hb_020112_010 Hb_020112_010 Hb_001300_060--Hb_020112_010 Hb_005144_140--Hb_000917_070 Hb_004102_150 Hb_004102_150 Hb_005144_140--Hb_004102_150 Hb_000935_060 Hb_000935_060 Hb_005144_140--Hb_000935_060 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010 Hb_005348_020 Hb_005348_020 Hb_005144_140--Hb_005348_020 Hb_003057_040--Hb_023714_010 Hb_007007_020 Hb_007007_020 Hb_003057_040--Hb_007007_020 Hb_003057_040--Hb_001300_060 Hb_003057_040--Hb_005144_140 Hb_002413_030 Hb_002413_030 Hb_003057_040--Hb_002413_030 Hb_000917_070--Hb_004102_150 Hb_000917_070--Hb_000935_060 Hb_000917_070--Hb_005348_020 Hb_000740_140 Hb_000740_140 Hb_000917_070--Hb_000740_140 Hb_010308_010--Hb_000496_080 Hb_010308_010--Hb_004330_050 Hb_010308_010--Hb_020112_010 Hb_010308_010--Hb_000329_570 Hb_000743_070 Hb_000743_070 Hb_010308_010--Hb_000743_070 Hb_023714_010--Hb_000329_570 Hb_023714_010--Hb_001300_060 Hb_023714_010--Hb_002413_030 Hb_023714_010--Hb_007007_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00728748 0.06261 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0198821 0

CAGE analysis