Hb_006275_050

Information

Type -
Description -
Location Contig6275: 68794-70769
Sequence    

Annotation

kegg
ID rcu:RCOM_1596200
description cysteine protease, putative (EC:3.4.22.16)
nr
ID AIB06025.1
description CP3 [Hevea brasiliensis]
swissprot
ID P43296
description Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1
trembl
ID A0A060D3T9
description CP3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinase 15a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51733: 68815-70757
cDNA
(Sanger)
(ID:Location)		 009_A23.ab1: 69665-70757 , 037_B01.ab1: 69519-70757 , 042_M10.ab1: 69517-70724 , 045_A16.ab1: 69474-70683

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006275_050 0.0 - - CP3 [Hevea brasiliensis]
2 Hb_013753_010 0.0964313902 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
3 Hb_012760_200 0.1011260228 - - protein phsophatase-2a, putative [Ricinus communis]
4 Hb_000890_220 0.1065282151 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
5 Hb_004032_350 0.1076870284 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
6 Hb_000608_340 0.1083629709 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
7 Hb_000185_090 0.1108627253 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
8 Hb_001486_120 0.1119500575 - - PREDICTED: importin-5-like [Jatropha curcas]
9 Hb_009421_030 0.1140442384 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
10 Hb_002374_150 0.1146616611 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
11 Hb_000779_040 0.1149889527 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
12 Hb_000573_040 0.1176202299 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
13 Hb_000016_180 0.1177230125 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
14 Hb_000211_090 0.1181467268 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
15 Hb_002918_070 0.1189984201 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
16 Hb_000792_110 0.1226853226 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
17 Hb_101151_020 0.1231981607 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004531_090 0.1232953758 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
19 Hb_000134_360 0.1235779864 - - PREDICTED: protein gar2 [Jatropha curcas]
20 Hb_113216_010 0.1237247654 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_006275_050 Hb_006275_050 Hb_013753_010 Hb_013753_010 Hb_006275_050--Hb_013753_010 Hb_012760_200 Hb_012760_200 Hb_006275_050--Hb_012760_200 Hb_000890_220 Hb_000890_220 Hb_006275_050--Hb_000890_220 Hb_004032_350 Hb_004032_350 Hb_006275_050--Hb_004032_350 Hb_000608_340 Hb_000608_340 Hb_006275_050--Hb_000608_340 Hb_000185_090 Hb_000185_090 Hb_006275_050--Hb_000185_090 Hb_013753_010--Hb_000890_220 Hb_013753_010--Hb_004032_350 Hb_013753_010--Hb_012760_200 Hb_101151_020 Hb_101151_020 Hb_013753_010--Hb_101151_020 Hb_000331_480 Hb_000331_480 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_012760_200--Hb_000331_480 Hb_000779_040 Hb_000779_040 Hb_000890_220--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_000890_220--Hb_000211_090 Hb_000792_110 Hb_000792_110 Hb_000890_220--Hb_000792_110 Hb_000890_220--Hb_101151_020 Hb_000890_220--Hb_012760_200 Hb_000076_290 Hb_000076_290 Hb_004032_350--Hb_000076_290 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_004032_350--Hb_001034_020 Hb_000608_340--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000608_340--Hb_019871_020 Hb_002374_150 Hb_002374_150 Hb_000608_340--Hb_002374_150 Hb_003666_050 Hb_003666_050 Hb_000608_340--Hb_003666_050 Hb_000619_070 Hb_000619_070 Hb_000608_340--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_000608_340--Hb_035360_010 Hb_113216_010 Hb_113216_010 Hb_000185_090--Hb_113216_010 Hb_000185_090--Hb_000211_090 Hb_000185_090--Hb_003666_050 Hb_000185_090--Hb_000779_040 Hb_000016_180 Hb_000016_180 Hb_000185_090--Hb_000016_180 Hb_000185_090--Hb_019871_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1327.85 724.724 24.6847 194.648 1971.75 1684.86
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
596.972 129.695 354.812 293.114 152.298

CAGE analysis