Hb_006275_070

Information

Type -
Description -
Location Contig6275: 81543-90040
Sequence    

Annotation

kegg
ID rcu:RCOM_1596190
description Transcription initiation factor IIF subunit beta, putative
nr
ID XP_012071957.1
description PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
swissprot
ID Q03123
description General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1
trembl
ID E6NU66
description JHL18I08.10 protein OS=Jatropha curcas GN=JHL18I08.10 PE=4 SV=1
Gene Ontology
ID GO:0005674
description transcription initiation factor iif subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51734: 80014-80882 , PASA_asmbl_51735: 81542-90427 , PASA_asmbl_51737: 89498-89968
cDNA
(Sanger)
(ID:Location)		 016_G11.ab1: 80027-80694 , 019_J15.ab1: 80027-80689 , 050_K18.ab1: 80014-80685

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006275_070 0.0 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
2 Hb_029879_070 0.0700468322 - - PREDICTED: phospholipase A I [Jatropha curcas]
3 Hb_000479_250 0.0722767876 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
4 Hb_000656_010 0.0771508401 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
5 Hb_001936_130 0.0864358254 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
6 Hb_008176_010 0.0870106475 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20090 [Jatropha curcas]
7 Hb_004159_020 0.0871202775 - - Putative dihydrodipicolinate reductase 2, chloroplastic [Aegilops tauschii]
8 Hb_001629_030 0.0881700414 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
9 Hb_009328_020 0.0888218708 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000254_090 0.0890376712 - - PREDICTED: la protein 2 [Jatropha curcas]
11 Hb_024128_020 0.0890450228 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
12 Hb_091296_010 0.0908202578 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_001366_180 0.091769457 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
14 Hb_011228_010 0.0919505661 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003025_100 0.0920709763 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
16 Hb_029510_050 0.0930427945 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
17 Hb_001818_100 0.0943367447 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
18 Hb_006274_030 0.0951811547 - - F-box and wd40 domain protein, putative [Ricinus communis]
19 Hb_003994_150 0.0954554679 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
20 Hb_000556_090 0.0962302146 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006275_070 Hb_006275_070 Hb_029879_070 Hb_029879_070 Hb_006275_070--Hb_029879_070 Hb_000479_250 Hb_000479_250 Hb_006275_070--Hb_000479_250 Hb_000656_010 Hb_000656_010 Hb_006275_070--Hb_000656_010 Hb_001936_130 Hb_001936_130 Hb_006275_070--Hb_001936_130 Hb_008176_010 Hb_008176_010 Hb_006275_070--Hb_008176_010 Hb_004159_020 Hb_004159_020 Hb_006275_070--Hb_004159_020 Hb_000254_090 Hb_000254_090 Hb_029879_070--Hb_000254_090 Hb_029510_050 Hb_029510_050 Hb_029879_070--Hb_029510_050 Hb_002685_210 Hb_002685_210 Hb_029879_070--Hb_002685_210 Hb_027380_220 Hb_027380_220 Hb_029879_070--Hb_027380_220 Hb_005291_050 Hb_005291_050 Hb_029879_070--Hb_005291_050 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_006274_030 Hb_006274_030 Hb_000479_250--Hb_006274_030 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_001366_180 Hb_001366_180 Hb_000479_250--Hb_001366_180 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_001876_010 Hb_001876_010 Hb_000656_010--Hb_001876_010 Hb_000789_200 Hb_000789_200 Hb_000656_010--Hb_000789_200 Hb_001629_030 Hb_001629_030 Hb_000656_010--Hb_001629_030 Hb_005976_080 Hb_005976_080 Hb_000656_010--Hb_005976_080 Hb_000189_550 Hb_000189_550 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090 Hb_001004_070 Hb_001004_070 Hb_001936_130--Hb_001004_070 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_003025_100 Hb_003025_100 Hb_001936_130--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_000406_130 Hb_000406_130 Hb_008176_010--Hb_000406_130 Hb_000471_110 Hb_000471_110 Hb_008176_010--Hb_000471_110 Hb_000069_210 Hb_000069_210 Hb_008176_010--Hb_000069_210 Hb_008176_010--Hb_001936_130 Hb_001352_020 Hb_001352_020 Hb_008176_010--Hb_001352_020 Hb_004159_020--Hb_005976_080 Hb_004159_020--Hb_091296_010 Hb_004159_020--Hb_003025_100 Hb_000072_320 Hb_000072_320 Hb_004159_020--Hb_000072_320 Hb_001828_150 Hb_001828_150 Hb_004159_020--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4032 0.79306 1.35152 2.38929 1.5249 2.6277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60699 1.99773 2.77321 2.31279 3.4984

CAGE analysis