Hb_006277_010

Information

Type -
Description -
Location Contig6277: 7234-10459
Sequence    

Annotation

kegg
ID tcc:TCM_029640
description SecY protein transport family protein
nr
ID XP_012450346.1
description PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
swissprot
ID Q54XK2
description Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1
trembl
ID A0A0B0P5V7
description Protein transport Sec61 subunit alpha OS=Gossypium arboreum GN=F383_02426 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transport protein sec61 subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51739: 7347-10271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006277_010 0.0 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
2 Hb_004046_030 0.0720132978 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
3 Hb_003206_110 0.0747693022 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
4 Hb_170138_010 0.0817118931 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000950_010 0.101055861 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
6 Hb_000185_220 0.1030655674 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
7 Hb_005601_040 0.103689957 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
8 Hb_000116_130 0.1050741405 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
9 Hb_000019_200 0.1064434726 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
10 Hb_000309_050 0.1067254205 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
11 Hb_000800_090 0.1075614829 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
12 Hb_007416_210 0.1077011882 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
13 Hb_002876_270 0.1081044372 - - PREDICTED: probable magnesium transporter NIPA4 isoform X1 [Jatropha curcas]
14 Hb_002748_020 0.1084533084 - - transducin family protein [Populus trichocarpa]
15 Hb_003159_050 0.1093033751 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000946_110 0.1094608615 - - GTP cyclohydrolase I, putative [Ricinus communis]
17 Hb_000019_180 0.1108162953 transcription factor TF Family: SET Histone-lysine N-methyltransferase family protein [Populus trichocarpa]
18 Hb_001195_400 0.1121497633 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
19 Hb_012393_030 0.1136984894 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
20 Hb_002392_010 0.1139187909 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_006277_010 Hb_006277_010 Hb_004046_030 Hb_004046_030 Hb_006277_010--Hb_004046_030 Hb_003206_110 Hb_003206_110 Hb_006277_010--Hb_003206_110 Hb_170138_010 Hb_170138_010 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_000185_220 Hb_000185_220 Hb_006277_010--Hb_000185_220 Hb_005601_040 Hb_005601_040 Hb_006277_010--Hb_005601_040 Hb_004046_030--Hb_003206_110 Hb_004046_030--Hb_170138_010 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_003206_110--Hb_170138_010 Hb_003206_110--Hb_000185_220 Hb_001195_400 Hb_001195_400 Hb_003206_110--Hb_001195_400 Hb_000359_210 Hb_000359_210 Hb_003206_110--Hb_000359_210 Hb_170138_010--Hb_001195_400 Hb_170138_010--Hb_000185_220 Hb_170138_010--Hb_000359_210 Hb_000684_210 Hb_000684_210 Hb_170138_010--Hb_000684_210 Hb_002908_060 Hb_002908_060 Hb_000950_010--Hb_002908_060 Hb_003044_080 Hb_003044_080 Hb_000950_010--Hb_003044_080 Hb_000976_100 Hb_000976_100 Hb_000950_010--Hb_000976_100 Hb_000950_010--Hb_004046_030 Hb_000327_160 Hb_000327_160 Hb_000950_010--Hb_000327_160 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_000185_220--Hb_001195_400 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_001629_030 Hb_001629_030 Hb_005601_040--Hb_001629_030 Hb_005601_040--Hb_001195_400 Hb_001818_100 Hb_001818_100 Hb_005601_040--Hb_001818_100 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_005601_040--Hb_000185_220 Hb_003305_040 Hb_003305_040 Hb_005601_040--Hb_003305_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.39609 6.16665 15.7906 35.0654 10.3143 13.3897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7461 11.8046 25.8626 27.5972 38.5417

CAGE analysis