Hb_006277_030

Information

Type -
Description -
Location Contig6277: 29323-30732
Sequence    

Annotation

kegg
ID rcu:RCOM_1251290
description hypothetical protein
nr
ID XP_002522256.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8D7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1251290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51740: 29352-30792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006277_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002818_170 0.0605115343 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
3 Hb_002025_380 0.0655903748 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
4 Hb_003189_010 0.0722487764 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
5 Hb_006501_100 0.0783686505 - - malic enzyme, putative [Ricinus communis]
6 Hb_004282_010 0.0937200472 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
7 Hb_005144_080 0.1075458303 - - Serine carboxypeptidase, putative [Ricinus communis]
8 Hb_002097_180 0.1160923872 - - PREDICTED: probable pectate lyase 12 isoform X1 [Jatropha curcas]
9 Hb_005731_070 0.1198385598 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000956_070 0.1252480661 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
11 Hb_001568_010 0.126290242 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009767_050 0.1294338533 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
13 Hb_000014_080 0.1302777975 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
14 Hb_002072_040 0.1307178667 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
15 Hb_001040_200 0.1336085417 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
16 Hb_003226_050 0.1419962299 - - Pectinesterase-3 precursor, putative [Ricinus communis]
17 Hb_007017_100 0.1479677313 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
18 Hb_000364_130 0.1497244371 - - unnamed protein product [Vitis vinifera]
19 Hb_008727_040 0.1499668433 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000668_050 0.1503716416 - - phosphoglycerate mutase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006277_030 Hb_006277_030 Hb_002818_170 Hb_002818_170 Hb_006277_030--Hb_002818_170 Hb_002025_380 Hb_002025_380 Hb_006277_030--Hb_002025_380 Hb_003189_010 Hb_003189_010 Hb_006277_030--Hb_003189_010 Hb_006501_100 Hb_006501_100 Hb_006277_030--Hb_006501_100 Hb_004282_010 Hb_004282_010 Hb_006277_030--Hb_004282_010 Hb_005144_080 Hb_005144_080 Hb_006277_030--Hb_005144_080 Hb_002818_170--Hb_003189_010 Hb_002097_180 Hb_002097_180 Hb_002818_170--Hb_002097_180 Hb_002818_170--Hb_006501_100 Hb_002818_170--Hb_002025_380 Hb_002818_170--Hb_004282_010 Hb_002025_380--Hb_003189_010 Hb_002025_380--Hb_002097_180 Hb_002025_380--Hb_005144_080 Hb_002025_380--Hb_006501_100 Hb_003189_010--Hb_002097_180 Hb_005731_070 Hb_005731_070 Hb_003189_010--Hb_005731_070 Hb_000668_050 Hb_000668_050 Hb_003189_010--Hb_000668_050 Hb_006501_100--Hb_004282_010 Hb_000956_070 Hb_000956_070 Hb_006501_100--Hb_000956_070 Hb_000014_080 Hb_000014_080 Hb_006501_100--Hb_000014_080 Hb_004282_010--Hb_000956_070 Hb_004282_010--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010 Hb_005144_080--Hb_004282_010 Hb_005144_080--Hb_005731_070 Hb_005839_030 Hb_005839_030 Hb_005144_080--Hb_005839_030 Hb_011129_020 Hb_011129_020 Hb_005144_080--Hb_011129_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.058864 0.976475 6.01247 12.2994 0.014747 0.0447334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.5573 3.0835

CAGE analysis