Hb_006277_080

Information

Type -
Description -
Location Contig6277: 59568-71738
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05960g
description POPTRDRAFT_713821; hypothetical protein
nr
ID XP_012091820.1
description PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9H2F0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s05960g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51742: 59609-65512 , PASA_asmbl_51743: 59609-65512 , PASA_asmbl_51745: 63481-63929 , PASA_asmbl_51746: 64227-64525 , PASA_asmbl_51747: 65524-71590 , PASA_asmbl_51749: 70365-71590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006277_080 0.0 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
2 Hb_000853_050 0.1040697503 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_140389_010 0.1048418494 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_000926_070 0.1209033631 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002276_030 0.1244398774 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]
6 Hb_003602_030 0.1269019876 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
7 Hb_003141_060 0.1276765426 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
8 Hb_001227_140 0.1294074944 - - PREDICTED: protein ROS1 [Jatropha curcas]
9 Hb_000002_300 0.1294765444 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
10 Hb_000608_360 0.1303600944 - - calreticulin, putative [Ricinus communis]
11 Hb_004324_120 0.1319601518 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
12 Hb_000005_100 0.1355574778 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
13 Hb_000574_320 0.1362649639 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
14 Hb_012539_040 0.1393529607 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
15 Hb_010098_040 0.1396042314 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
16 Hb_007982_040 0.1401463016 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_137600_010 0.1417838595 - - 50S ribosomal protein L1p, putative [Ricinus communis]
18 Hb_000479_210 0.1481165043 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
19 Hb_008878_020 0.1485363811 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
20 Hb_000679_080 0.1486830783 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006277_080 Hb_006277_080 Hb_000853_050 Hb_000853_050 Hb_006277_080--Hb_000853_050 Hb_140389_010 Hb_140389_010 Hb_006277_080--Hb_140389_010 Hb_000926_070 Hb_000926_070 Hb_006277_080--Hb_000926_070 Hb_002276_030 Hb_002276_030 Hb_006277_080--Hb_002276_030 Hb_003602_030 Hb_003602_030 Hb_006277_080--Hb_003602_030 Hb_003141_060 Hb_003141_060 Hb_006277_080--Hb_003141_060 Hb_010632_010 Hb_010632_010 Hb_000853_050--Hb_010632_010 Hb_007765_130 Hb_007765_130 Hb_000853_050--Hb_007765_130 Hb_000853_050--Hb_003141_060 Hb_001227_140 Hb_001227_140 Hb_000853_050--Hb_001227_140 Hb_025045_010 Hb_025045_010 Hb_000853_050--Hb_025045_010 Hb_000574_320 Hb_000574_320 Hb_140389_010--Hb_000574_320 Hb_012539_040 Hb_012539_040 Hb_140389_010--Hb_012539_040 Hb_005015_020 Hb_005015_020 Hb_140389_010--Hb_005015_020 Hb_004324_120 Hb_004324_120 Hb_140389_010--Hb_004324_120 Hb_005288_180 Hb_005288_180 Hb_140389_010--Hb_005288_180 Hb_006478_050 Hb_006478_050 Hb_000926_070--Hb_006478_050 Hb_000917_200 Hb_000917_200 Hb_000926_070--Hb_000917_200 Hb_000103_230 Hb_000103_230 Hb_000926_070--Hb_000103_230 Hb_037711_010 Hb_037711_010 Hb_000926_070--Hb_037711_010 Hb_019863_050 Hb_019863_050 Hb_000926_070--Hb_019863_050 Hb_008878_020 Hb_008878_020 Hb_002276_030--Hb_008878_020 Hb_001244_050 Hb_001244_050 Hb_002276_030--Hb_001244_050 Hb_000608_360 Hb_000608_360 Hb_002276_030--Hb_000608_360 Hb_001508_030 Hb_001508_030 Hb_002276_030--Hb_001508_030 Hb_001172_150 Hb_001172_150 Hb_002276_030--Hb_001172_150 Hb_137600_010 Hb_137600_010 Hb_003602_030--Hb_137600_010 Hb_000479_210 Hb_000479_210 Hb_003602_030--Hb_000479_210 Hb_001257_110 Hb_001257_110 Hb_003602_030--Hb_001257_110 Hb_000254_120 Hb_000254_120 Hb_003602_030--Hb_000254_120 Hb_005977_040 Hb_005977_040 Hb_003602_030--Hb_005977_040 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_003141_060--Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_003141_060--Hb_003915_020 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_000948_120 Hb_000948_120 Hb_003141_060--Hb_000948_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04163 15.0323 28.4122 9.72895 1.39687 2.06115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11599 0.81056 0.512971 7.14522 48.2412

CAGE analysis