Hb_006277_110

Information

Type -
Description -
Location Contig6277: 104014-104526
Sequence    

Annotation

kegg
ID rcu:RCOM_1250910
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002522248.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q40194
description Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
trembl
ID B9S8C9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1250910 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba1d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51750: 79219-104857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006277_110 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000392_190 0.0832685661 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
3 Hb_002284_230 0.0923295944 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
4 Hb_152371_010 0.101150694 - - RNA-binding KH domain-containing protein [Theobroma cacao]
5 Hb_019654_030 0.1026202228 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
6 Hb_006907_130 0.1051278841 - - unnamed protein product [Coffea canephora]
7 Hb_003940_040 0.1084906297 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011794_080 0.1087319435 - - acyl-CoA thioesterase, putative [Ricinus communis]
9 Hb_025194_100 0.1105864242 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
10 Hb_002422_070 0.1107474373 - - PREDICTED: putative protein TPRXL [Malus domestica]
11 Hb_000140_280 0.1166051095 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
12 Hb_000363_360 0.1175602993 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
13 Hb_002000_080 0.1191604067 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
14 Hb_000034_070 0.1192099731 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
15 Hb_001085_240 0.1192749128 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
16 Hb_001157_110 0.1193530751 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
17 Hb_002289_080 0.1202943124 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
18 Hb_003697_050 0.1204478217 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
19 Hb_003697_030 0.1219893045 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
20 Hb_003633_030 0.1230774125 - - f-actin capping protein alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_006277_110 Hb_006277_110 Hb_000392_190 Hb_000392_190 Hb_006277_110--Hb_000392_190 Hb_002284_230 Hb_002284_230 Hb_006277_110--Hb_002284_230 Hb_152371_010 Hb_152371_010 Hb_006277_110--Hb_152371_010 Hb_019654_030 Hb_019654_030 Hb_006277_110--Hb_019654_030 Hb_006907_130 Hb_006907_130 Hb_006277_110--Hb_006907_130 Hb_003940_040 Hb_003940_040 Hb_006277_110--Hb_003940_040 Hb_000140_280 Hb_000140_280 Hb_000392_190--Hb_000140_280 Hb_000392_190--Hb_003940_040 Hb_099878_030 Hb_099878_030 Hb_000392_190--Hb_099878_030 Hb_000735_110 Hb_000735_110 Hb_000392_190--Hb_000735_110 Hb_009787_030 Hb_009787_030 Hb_000392_190--Hb_009787_030 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_002284_230--Hb_019654_030 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_025194_100 Hb_025194_100 Hb_152371_010--Hb_025194_100 Hb_000095_080 Hb_000095_080 Hb_152371_010--Hb_000095_080 Hb_000310_090 Hb_000310_090 Hb_152371_010--Hb_000310_090 Hb_003777_320 Hb_003777_320 Hb_152371_010--Hb_003777_320 Hb_002289_080 Hb_002289_080 Hb_152371_010--Hb_002289_080 Hb_152371_010--Hb_002284_230 Hb_009193_030 Hb_009193_030 Hb_019654_030--Hb_009193_030 Hb_000363_360 Hb_000363_360 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_019654_030--Hb_003633_050 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080 Hb_015934_070 Hb_015934_070 Hb_006907_130--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_006907_130--Hb_031862_100 Hb_002000_080 Hb_002000_080 Hb_006907_130--Hb_002000_080 Hb_001386_040 Hb_001386_040 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_001545_080 Hb_001545_080 Hb_006907_130--Hb_001545_080 Hb_003940_040--Hb_099878_030 Hb_010142_030 Hb_010142_030 Hb_003940_040--Hb_010142_030 Hb_004109_310 Hb_004109_310 Hb_003940_040--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_003940_040--Hb_000023_280 Hb_003940_040--Hb_000140_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7236 12.1684 15.6646 62.3701 17.2073 60.3759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.5455 50.3603 45.4612 61.8224 33.8394

CAGE analysis