Hb_006289_020

Information

Type -
Description -
Location Contig6289: 48285-51087
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23580g
description POPTRDRAFT_770594; hypothetical protein
nr
ID XP_012080991.1
description PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16175 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51768: 48081-49333 , PASA_asmbl_51769: 48003-49333 , PASA_asmbl_51770: 48031-48273 , PASA_asmbl_51771: 50003-50571 , PASA_asmbl_51772: 50697-51195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006289_020 0.0 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
2 Hb_002965_160 0.1283253458 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
3 Hb_003878_060 0.1451560157 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
4 Hb_000236_480 0.155345421 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
5 Hb_008725_070 0.162288441 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
6 Hb_000960_090 0.1664213786 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000288_090 0.1682296223 - - unnamed protein product [Vitis vinifera]
8 Hb_000088_240 0.1685559136 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_006970_130 0.1698108784 - - PREDICTED: histone H3.3-like [Colobus angolensis palliatus]
10 Hb_004046_060 0.171286096 - - PREDICTED: protein CDI [Jatropha curcas]
11 Hb_000260_610 0.1745724198 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
12 Hb_006060_010 0.1745874435 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
13 Hb_008864_100 0.175559012 - - PREDICTED: uncharacterized protein LOC105631832 isoform X1 [Jatropha curcas]
14 Hb_004007_130 0.1779554205 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
15 Hb_002662_040 0.1780307981 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
16 Hb_000230_190 0.1787867847 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
17 Hb_004163_030 0.1788597516 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
18 Hb_007632_080 0.1813795691 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
19 Hb_003813_090 0.1830302783 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
20 Hb_004920_050 0.1833320851 - - DNA replication licensing factor MCM7, putative [Ricinus communis]

Gene co-expression network

sample Hb_006289_020 Hb_006289_020 Hb_002965_160 Hb_002965_160 Hb_006289_020--Hb_002965_160 Hb_003878_060 Hb_003878_060 Hb_006289_020--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_006289_020--Hb_000236_480 Hb_008725_070 Hb_008725_070 Hb_006289_020--Hb_008725_070 Hb_000960_090 Hb_000960_090 Hb_006289_020--Hb_000960_090 Hb_000288_090 Hb_000288_090 Hb_006289_020--Hb_000288_090 Hb_001862_050 Hb_001862_050 Hb_002965_160--Hb_001862_050 Hb_001123_310 Hb_001123_310 Hb_002965_160--Hb_001123_310 Hb_008511_040 Hb_008511_040 Hb_002965_160--Hb_008511_040 Hb_006133_020 Hb_006133_020 Hb_002965_160--Hb_006133_020 Hb_001188_050 Hb_001188_050 Hb_002965_160--Hb_001188_050 Hb_006060_010 Hb_006060_010 Hb_003878_060--Hb_006060_010 Hb_003599_060 Hb_003599_060 Hb_003878_060--Hb_003599_060 Hb_014497_070 Hb_014497_070 Hb_003878_060--Hb_014497_070 Hb_012753_150 Hb_012753_150 Hb_003878_060--Hb_012753_150 Hb_007474_020 Hb_007474_020 Hb_003878_060--Hb_007474_020 Hb_004452_090 Hb_004452_090 Hb_000236_480--Hb_004452_090 Hb_000031_300 Hb_000031_300 Hb_000236_480--Hb_000031_300 Hb_001541_190 Hb_001541_190 Hb_000236_480--Hb_001541_190 Hb_000236_480--Hb_006060_010 Hb_000020_080 Hb_000020_080 Hb_000236_480--Hb_000020_080 Hb_004147_070 Hb_004147_070 Hb_008725_070--Hb_004147_070 Hb_001780_030 Hb_001780_030 Hb_008725_070--Hb_001780_030 Hb_000540_160 Hb_000540_160 Hb_008725_070--Hb_000540_160 Hb_000028_490 Hb_000028_490 Hb_008725_070--Hb_000028_490 Hb_008725_070--Hb_000960_090 Hb_000260_650 Hb_000260_650 Hb_000960_090--Hb_000260_650 Hb_000566_130 Hb_000566_130 Hb_000960_090--Hb_000566_130 Hb_000960_090--Hb_000288_090 Hb_000077_110 Hb_000077_110 Hb_000960_090--Hb_000077_110 Hb_006970_130 Hb_006970_130 Hb_000960_090--Hb_006970_130 Hb_093458_020 Hb_093458_020 Hb_000960_090--Hb_093458_020 Hb_000181_270 Hb_000181_270 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_000288_090--Hb_006970_130 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_000288_090--Hb_000260_650 Hb_004920_050 Hb_004920_050 Hb_000288_090--Hb_004920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.243293 0.936062 5.4236 3.40473 0.112654 0.0558944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101055 0.0795 0.695213 0.868189 0.497532

CAGE analysis