Hb_006326_030

Information

Type -
Description -
Location Contig6326: 9181-10216
Sequence    

Annotation

kegg
ID rcu:RCOM_0680180
description hypothetical protein
nr
ID XP_002516873.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9RT04
description CASP-like protein 1E1 OS=Ricinus communis GN=RCOM_0680180 PE=2 SV=1
trembl
ID A0A067L7E4
description CASP-like protein OS=Jatropha curcas GN=JCGZ_02017 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein vit_05s0020g01820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51857: 9217-9847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006326_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_018212_020 0.1092940535 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
3 Hb_010813_030 0.1119454482 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
4 Hb_132515_010 0.1206365148 - - phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_000286_190 0.1290862742 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
6 Hb_000920_360 0.1343188132 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
7 Hb_000876_050 0.1344738279 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
8 Hb_000177_120 0.1398647192 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
9 Hb_000254_150 0.1439574045 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
10 Hb_064482_010 0.1458101528 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000608_450 0.1484321607 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
12 Hb_001611_010 0.1486690704 - - scab resistance family protein [Populus trichocarpa]
13 Hb_006569_110 0.1528590911 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000221_170 0.1556922517 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
15 Hb_029508_030 0.1558876977 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
16 Hb_002997_050 0.157342547 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
17 Hb_000740_130 0.162316738 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_001864_010 0.1650696895 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007894_260 0.165543684 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000120_980 0.1747782038 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_006326_030 Hb_006326_030 Hb_018212_020 Hb_018212_020 Hb_006326_030--Hb_018212_020 Hb_010813_030 Hb_010813_030 Hb_006326_030--Hb_010813_030 Hb_132515_010 Hb_132515_010 Hb_006326_030--Hb_132515_010 Hb_000286_190 Hb_000286_190 Hb_006326_030--Hb_000286_190 Hb_000920_360 Hb_000920_360 Hb_006326_030--Hb_000920_360 Hb_000876_050 Hb_000876_050 Hb_006326_030--Hb_000876_050 Hb_018212_020--Hb_010813_030 Hb_000254_150 Hb_000254_150 Hb_018212_020--Hb_000254_150 Hb_018212_020--Hb_132515_010 Hb_006569_110 Hb_006569_110 Hb_018212_020--Hb_006569_110 Hb_002997_050 Hb_002997_050 Hb_018212_020--Hb_002997_050 Hb_010813_030--Hb_000254_150 Hb_010813_030--Hb_000876_050 Hb_010813_030--Hb_132515_010 Hb_001675_130 Hb_001675_130 Hb_010813_030--Hb_001675_130 Hb_054865_030 Hb_054865_030 Hb_132515_010--Hb_054865_030 Hb_064482_010 Hb_064482_010 Hb_132515_010--Hb_064482_010 Hb_000740_130 Hb_000740_130 Hb_132515_010--Hb_000740_130 Hb_003060_080 Hb_003060_080 Hb_132515_010--Hb_003060_080 Hb_000286_190--Hb_000920_360 Hb_029508_030 Hb_029508_030 Hb_000286_190--Hb_029508_030 Hb_005797_030 Hb_005797_030 Hb_000286_190--Hb_005797_030 Hb_001864_010 Hb_001864_010 Hb_000286_190--Hb_001864_010 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_000608_450 Hb_000608_450 Hb_000286_190--Hb_000608_450 Hb_000920_360--Hb_005797_030 Hb_000920_360--Hb_029508_030 Hb_000920_360--Hb_000608_450 Hb_088916_010 Hb_088916_010 Hb_000920_360--Hb_088916_010 Hb_000920_360--Hb_001864_010 Hb_000221_170 Hb_000221_170 Hb_000876_050--Hb_000221_170 Hb_000684_010 Hb_000684_010 Hb_000876_050--Hb_000684_010 Hb_005333_100 Hb_005333_100 Hb_000876_050--Hb_005333_100 Hb_000120_980 Hb_000120_980 Hb_000876_050--Hb_000120_980 Hb_005542_110 Hb_005542_110 Hb_000876_050--Hb_005542_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.83084 0.137446 0.662113 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.194982 7.71302 2.59626

CAGE analysis