Hb_006326_040

Information

Type -
Description -
Location Contig6326: 11190-15392
Sequence    

Annotation

kegg
ID rcu:RCOM_0680190
description hypothetical protein
nr
ID XP_002516874.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RT05
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0680190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51858: 11256-12894 , PASA_asmbl_51859: 12897-14754 , PASA_asmbl_51860: 16387-19895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006326_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001931_010 0.0505426174 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
3 Hb_008071_020 0.0629850953 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
4 Hb_004889_020 0.0680473159 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
5 Hb_000505_130 0.0711081071 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
6 Hb_000566_120 0.071899028 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
7 Hb_028396_010 0.0735092527 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
8 Hb_000045_310 0.0735881934 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
9 Hb_000538_120 0.0764811048 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
10 Hb_006573_190 0.0773142695 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
11 Hb_000946_090 0.0780477306 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
12 Hb_045003_010 0.0784796696 - - Stomatin-1, putative [Ricinus communis]
13 Hb_154948_040 0.0788830214 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
14 Hb_017895_040 0.0794782253 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
15 Hb_001341_150 0.0794912156 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
16 Hb_000390_300 0.079614021 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
17 Hb_000676_390 0.0804943041 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
18 Hb_001718_030 0.0812737853 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
19 Hb_003582_060 0.0828967261 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
20 Hb_005765_050 0.083926447 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]

Gene co-expression network

sample Hb_006326_040 Hb_006326_040 Hb_001931_010 Hb_001931_010 Hb_006326_040--Hb_001931_010 Hb_008071_020 Hb_008071_020 Hb_006326_040--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_006326_040--Hb_004889_020 Hb_000505_130 Hb_000505_130 Hb_006326_040--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_006326_040--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_006326_040--Hb_028396_010 Hb_001931_010--Hb_008071_020 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_001931_010--Hb_000505_130 Hb_001931_010--Hb_000566_120 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_026889_030 Hb_026889_030 Hb_004889_020--Hb_026889_030 Hb_004157_020 Hb_004157_020 Hb_004889_020--Hb_004157_020 Hb_157022_010 Hb_157022_010 Hb_004889_020--Hb_157022_010 Hb_000676_390 Hb_000676_390 Hb_004889_020--Hb_000676_390 Hb_004889_020--Hb_008071_020 Hb_000310_020 Hb_000310_020 Hb_000505_130--Hb_000310_020 Hb_000221_190 Hb_000221_190 Hb_000505_130--Hb_000221_190 Hb_044653_040 Hb_044653_040 Hb_000505_130--Hb_044653_040 Hb_003124_150 Hb_003124_150 Hb_000505_130--Hb_003124_150 Hb_000566_120--Hb_000045_310 Hb_006573_190 Hb_006573_190 Hb_000566_120--Hb_006573_190 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_028396_010--Hb_000045_310 Hb_028396_010--Hb_001341_150 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_028396_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63841 4.05552 10.4876 11.7425 3.98131 6.45998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.87226 17.4997 9.99121 7.3551 6.05046

CAGE analysis