Hb_006326_050

Information

Type -
Description -
Location Contig6326: 16713-19868
Sequence    

Annotation

kegg
ID rcu:RCOM_0680200
description zinc finger protein, putative
nr
ID XP_012069396.1
description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q9CR50
description RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1
trembl
ID A0A067KV36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02015 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51860: 16387-19895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006326_050 0.0 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
2 Hb_002870_020 0.0932132561 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
3 Hb_028207_020 0.1022278577 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
4 Hb_178968_140 0.1035253076 - - PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_029142_030 0.1083749758 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
6 Hb_002255_040 0.1128721889 - - PREDICTED: biotin synthase [Jatropha curcas]
7 Hb_065755_030 0.1147174833 - - -
8 Hb_005975_010 0.122406354 - - [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase, putative [Ricinus communis]
9 Hb_065525_130 0.1249001389 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_066967_020 0.1258487912 - - RAB6-interacting protein, putative [Ricinus communis]
11 Hb_000340_130 0.1267390298 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
12 Hb_002485_030 0.1289673389 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
13 Hb_001519_040 0.1306283037 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
14 Hb_003581_210 0.1327794467 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
15 Hb_000663_020 0.1328000357 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
16 Hb_001619_050 0.13416478 - - PREDICTED: uncharacterized protein LOC105630599 isoform X1 [Jatropha curcas]
17 Hb_026234_010 0.1343289807 - - choline monooxygenase, putative [Ricinus communis]
18 Hb_000445_140 0.1346896493 - - hypothetical protein RCOM_0561550 [Ricinus communis]
19 Hb_011249_030 0.1347042177 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
20 Hb_001486_170 0.1354714744 - - PREDICTED: syntaxin-132 [Jatropha curcas]

Gene co-expression network

sample Hb_006326_050 Hb_006326_050 Hb_002870_020 Hb_002870_020 Hb_006326_050--Hb_002870_020 Hb_028207_020 Hb_028207_020 Hb_006326_050--Hb_028207_020 Hb_178968_140 Hb_178968_140 Hb_006326_050--Hb_178968_140 Hb_029142_030 Hb_029142_030 Hb_006326_050--Hb_029142_030 Hb_002255_040 Hb_002255_040 Hb_006326_050--Hb_002255_040 Hb_065755_030 Hb_065755_030 Hb_006326_050--Hb_065755_030 Hb_003228_100 Hb_003228_100 Hb_002870_020--Hb_003228_100 Hb_004032_370 Hb_004032_370 Hb_002870_020--Hb_004032_370 Hb_001619_050 Hb_001619_050 Hb_002870_020--Hb_001619_050 Hb_000663_020 Hb_000663_020 Hb_002870_020--Hb_000663_020 Hb_077026_010 Hb_077026_010 Hb_002870_020--Hb_077026_010 Hb_000445_140 Hb_000445_140 Hb_002870_020--Hb_000445_140 Hb_028207_020--Hb_002255_040 Hb_010367_030 Hb_010367_030 Hb_028207_020--Hb_010367_030 Hb_028207_020--Hb_065755_030 Hb_003581_210 Hb_003581_210 Hb_028207_020--Hb_003581_210 Hb_011249_030 Hb_011249_030 Hb_028207_020--Hb_011249_030 Hb_178968_140--Hb_065755_030 Hb_178968_140--Hb_000663_020 Hb_001328_030 Hb_001328_030 Hb_178968_140--Hb_001328_030 Hb_005731_110 Hb_005731_110 Hb_178968_140--Hb_005731_110 Hb_001541_050 Hb_001541_050 Hb_178968_140--Hb_001541_050 Hb_000640_160 Hb_000640_160 Hb_178968_140--Hb_000640_160 Hb_005975_010 Hb_005975_010 Hb_029142_030--Hb_005975_010 Hb_029142_030--Hb_011249_030 Hb_000002_120 Hb_000002_120 Hb_029142_030--Hb_000002_120 Hb_029142_030--Hb_002255_040 Hb_000436_100 Hb_000436_100 Hb_029142_030--Hb_000436_100 Hb_000340_130 Hb_000340_130 Hb_029142_030--Hb_000340_130 Hb_006555_040 Hb_006555_040 Hb_002255_040--Hb_006555_040 Hb_002255_040--Hb_011249_030 Hb_002255_040--Hb_003581_210 Hb_000424_020 Hb_000424_020 Hb_002255_040--Hb_000424_020 Hb_065755_030--Hb_001328_030 Hb_003760_030 Hb_003760_030 Hb_065755_030--Hb_003760_030 Hb_065755_030--Hb_005731_110 Hb_000959_220 Hb_000959_220 Hb_065755_030--Hb_000959_220 Hb_001776_060 Hb_001776_060 Hb_065755_030--Hb_001776_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00558 2.52787 10.6824 4.50338 3.40546 4.34942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6819 2.60903 1.29045 2.44936 4.90848

CAGE analysis