Hb_006346_040

Information

Type -
Description -
Location Contig6346: 44148-46794
Sequence    

Annotation

kegg
ID pop:POPTR_0011s15220g
description POPTRDRAFT_569242; zinc finger family protein
nr
ID KDP25179.1
description hypothetical protein JCGZ_20335 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K073
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20335 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51888: 44641-46164 , PASA_asmbl_51889: 44234-46847 , PASA_asmbl_51890: 44854-45527
cDNA
(Sanger)
(ID:Location)		 004_K19.ab1: 44903-45720 , 026_B20.ab1: 45530-45709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006346_040 0.0 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
2 Hb_000283_130 0.0923715441 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
3 Hb_001171_070 0.0940073847 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 1, mitochondrial-like isoform X1 [Jatropha curcas]
4 Hb_005883_010 0.0980025067 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007403_050 0.1008978754 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
6 Hb_000084_030 0.1010525721 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000457_050 0.1024275042 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
8 Hb_002025_110 0.1041022187 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
9 Hb_000261_220 0.1048452051 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
10 Hb_003299_030 0.106278387 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
11 Hb_010738_010 0.1064953901 - - PREDICTED: B2 protein [Jatropha curcas]
12 Hb_001083_050 0.1065230532 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
13 Hb_001616_050 0.1093159775 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
14 Hb_000140_330 0.1103877754 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
15 Hb_031711_010 0.1104211688 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
16 Hb_003086_190 0.1143402813 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
17 Hb_005291_040 0.1196826271 - - PREDICTED: gamma-gliadin [Jatropha curcas]
18 Hb_003878_140 0.1227856328 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
19 Hb_000939_060 0.1230050481 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
20 Hb_017075_030 0.1243374799 - - helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006346_040 Hb_006346_040 Hb_000283_130 Hb_000283_130 Hb_006346_040--Hb_000283_130 Hb_001171_070 Hb_001171_070 Hb_006346_040--Hb_001171_070 Hb_005883_010 Hb_005883_010 Hb_006346_040--Hb_005883_010 Hb_007403_050 Hb_007403_050 Hb_006346_040--Hb_007403_050 Hb_000084_030 Hb_000084_030 Hb_006346_040--Hb_000084_030 Hb_000457_050 Hb_000457_050 Hb_006346_040--Hb_000457_050 Hb_000283_130--Hb_005883_010 Hb_010738_010 Hb_010738_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_017075_030 Hb_017075_030 Hb_000283_130--Hb_017075_030 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050 Hb_000261_220 Hb_000261_220 Hb_001171_070--Hb_000261_220 Hb_002025_110 Hb_002025_110 Hb_001171_070--Hb_002025_110 Hb_001083_050 Hb_001083_050 Hb_001171_070--Hb_001083_050 Hb_001171_070--Hb_000457_050 Hb_005489_080 Hb_005489_080 Hb_001171_070--Hb_005489_080 Hb_007943_120 Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005188_060 Hb_005188_060 Hb_005883_010--Hb_005188_060 Hb_005883_010--Hb_010738_010 Hb_000140_330 Hb_000140_330 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_000034_160 Hb_000034_160 Hb_007403_050--Hb_000034_160 Hb_011465_030 Hb_011465_030 Hb_007403_050--Hb_011465_030 Hb_001946_300 Hb_001946_300 Hb_007403_050--Hb_001946_300 Hb_000363_130 Hb_000363_130 Hb_007403_050--Hb_000363_130 Hb_004032_180 Hb_004032_180 Hb_007403_050--Hb_004032_180 Hb_007403_050--Hb_000283_130 Hb_002411_030 Hb_002411_030 Hb_000084_030--Hb_002411_030 Hb_003411_110 Hb_003411_110 Hb_000084_030--Hb_003411_110 Hb_003299_030 Hb_003299_030 Hb_000084_030--Hb_003299_030 Hb_000084_030--Hb_000457_050 Hb_001477_070 Hb_001477_070 Hb_000084_030--Hb_001477_070 Hb_000457_050--Hb_000261_220 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_000457_050--Hb_003299_030 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.3448 61.3286 33.0493 13.5915 40.0848 45.239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2535 19.338 24.7088 6.94582 8.1251

CAGE analysis