Hb_006351_030

Information

Type -
Description -
Location Contig6351: 75741-80299
Sequence    

Annotation

kegg
ID rcu:RCOM_0498040
description protein binding protein, putative
nr
ID XP_012088157.1
description PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01345 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase march8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51932: 75704-80254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006351_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]
2 Hb_001025_100 0.0709052624 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
3 Hb_001782_100 0.0839269032 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_000098_270 0.0902534992 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
5 Hb_000152_590 0.0942043869 - - PREDICTED: 21 kDa protein [Jatropha curcas]
6 Hb_000878_120 0.1080433113 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]
7 Hb_006916_120 0.1115543291 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
8 Hb_010672_010 0.1161192695 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
9 Hb_008725_100 0.1163373769 - - PREDICTED: histone H1-like [Jatropha curcas]
10 Hb_003055_080 0.1175114656 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Jatropha curcas]
11 Hb_001141_440 0.1257440774 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
12 Hb_133508_020 0.126471678 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
13 Hb_043552_010 0.1300849693 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
14 Hb_007590_110 0.1310594061 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
15 Hb_000162_190 0.1320307353 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
16 Hb_000345_230 0.1329567315 - - -
17 Hb_000805_270 0.1355531329 - - PREDICTED: expansin-A4 [Gossypium raimondii]
18 Hb_074419_010 0.1364394359 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
19 Hb_003935_040 0.1374033594 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
20 Hb_000339_050 0.1377056987 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006351_030 Hb_006351_030 Hb_001025_100 Hb_001025_100 Hb_006351_030--Hb_001025_100 Hb_001782_100 Hb_001782_100 Hb_006351_030--Hb_001782_100 Hb_000098_270 Hb_000098_270 Hb_006351_030--Hb_000098_270 Hb_000152_590 Hb_000152_590 Hb_006351_030--Hb_000152_590 Hb_000878_120 Hb_000878_120 Hb_006351_030--Hb_000878_120 Hb_006916_120 Hb_006916_120 Hb_006351_030--Hb_006916_120 Hb_002304_100 Hb_002304_100 Hb_001025_100--Hb_002304_100 Hb_000339_050 Hb_000339_050 Hb_001025_100--Hb_000339_050 Hb_000805_270 Hb_000805_270 Hb_001025_100--Hb_000805_270 Hb_005916_040 Hb_005916_040 Hb_001025_100--Hb_005916_040 Hb_000162_190 Hb_000162_190 Hb_001025_100--Hb_000162_190 Hb_001782_100--Hb_000152_590 Hb_007590_110 Hb_007590_110 Hb_001782_100--Hb_007590_110 Hb_024682_030 Hb_024682_030 Hb_001782_100--Hb_024682_030 Hb_010672_010 Hb_010672_010 Hb_001782_100--Hb_010672_010 Hb_000535_040 Hb_000535_040 Hb_001782_100--Hb_000535_040 Hb_000289_020 Hb_000289_020 Hb_000098_270--Hb_000289_020 Hb_008725_100 Hb_008725_100 Hb_000098_270--Hb_008725_100 Hb_006810_040 Hb_006810_040 Hb_000098_270--Hb_006810_040 Hb_000098_270--Hb_010672_010 Hb_043552_010 Hb_043552_010 Hb_000098_270--Hb_043552_010 Hb_000152_590--Hb_010672_010 Hb_133508_020 Hb_133508_020 Hb_000152_590--Hb_133508_020 Hb_000152_590--Hb_006916_120 Hb_146901_020 Hb_146901_020 Hb_000152_590--Hb_146901_020 Hb_003055_080 Hb_003055_080 Hb_000878_120--Hb_003055_080 Hb_000862_050 Hb_000862_050 Hb_000878_120--Hb_000862_050 Hb_000878_120--Hb_008725_100 Hb_177195_010 Hb_177195_010 Hb_000878_120--Hb_177195_010 Hb_006120_130 Hb_006120_130 Hb_000878_120--Hb_006120_130 Hb_006916_120--Hb_133508_020 Hb_000975_090 Hb_000975_090 Hb_006916_120--Hb_000975_090 Hb_000631_100 Hb_000631_100 Hb_006916_120--Hb_000631_100 Hb_087427_010 Hb_087427_010 Hb_006916_120--Hb_087427_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.300141 1.47668 7.33494 10.3168 0.127576 0.0771928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.6113 0.868696

CAGE analysis