Hb_006351_060

Information

Type -
Description -
Location Contig6351: 88380-88874
Sequence    

Annotation

kegg
ID cmo:103502478
description 17.8 kDa class I heat shock protein-like
nr
ID XP_011654976.1
description PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
swissprot
ID P27880
description 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1
trembl
ID A0A0A0KP10
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G190530 PE=3 SV=1
Gene Ontology
ID GO:0005737
description kda class i heat shock

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51934: 85979-87497 , PASA_asmbl_51935: 88335-89126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006351_060 0.0 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
2 Hb_001758_110 0.1314938401 - - Ran GTPase binding protein, putative [Ricinus communis]
3 Hb_000281_070 0.1374098576 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
4 Hb_078106_010 0.1582468213 - - seed maturation protein PM37 [Populus trichocarpa]
5 Hb_023771_020 0.1756180141 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
6 Hb_006198_190 0.1761163415 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
7 Hb_003470_070 0.1957351645 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
8 Hb_004324_210 0.2046655878 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
9 Hb_000834_050 0.2092128637 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
10 Hb_000334_170 0.2097279567 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP42 isoform X1 [Jatropha curcas]
11 Hb_000264_230 0.2099628737 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
12 Hb_021254_010 0.2117691957 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
13 Hb_025905_010 0.2143009828 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
14 Hb_000175_630 0.2145196789 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
15 Hb_000116_400 0.2178435041 - - protein with unknown function [Ricinus communis]
16 Hb_006052_030 0.2182979628 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
17 Hb_001411_050 0.2185551873 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
18 Hb_006911_070 0.2187982401 - - 50S ribosomal protein L1p, putative [Ricinus communis]
19 Hb_005063_080 0.2208885663 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
20 Hb_000224_220 0.2251029395 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]

Gene co-expression network

sample Hb_006351_060 Hb_006351_060 Hb_001758_110 Hb_001758_110 Hb_006351_060--Hb_001758_110 Hb_000281_070 Hb_000281_070 Hb_006351_060--Hb_000281_070 Hb_078106_010 Hb_078106_010 Hb_006351_060--Hb_078106_010 Hb_023771_020 Hb_023771_020 Hb_006351_060--Hb_023771_020 Hb_006198_190 Hb_006198_190 Hb_006351_060--Hb_006198_190 Hb_003470_070 Hb_003470_070 Hb_006351_060--Hb_003470_070 Hb_001758_110--Hb_006198_190 Hb_001758_110--Hb_023771_020 Hb_001758_110--Hb_000281_070 Hb_001758_110--Hb_078106_010 Hb_000976_130 Hb_000976_130 Hb_001758_110--Hb_000976_130 Hb_000224_220 Hb_000224_220 Hb_000281_070--Hb_000224_220 Hb_000281_070--Hb_003470_070 Hb_006911_070 Hb_006911_070 Hb_000281_070--Hb_006911_070 Hb_005063_080 Hb_005063_080 Hb_000281_070--Hb_005063_080 Hb_001411_050 Hb_001411_050 Hb_000281_070--Hb_001411_050 Hb_001408_030 Hb_001408_030 Hb_000281_070--Hb_001408_030 Hb_078106_010--Hb_001411_050 Hb_006629_020 Hb_006629_020 Hb_078106_010--Hb_006629_020 Hb_078106_010--Hb_000281_070 Hb_006846_080 Hb_006846_080 Hb_078106_010--Hb_006846_080 Hb_078106_010--Hb_023771_020 Hb_002399_020 Hb_002399_020 Hb_023771_020--Hb_002399_020 Hb_000762_110 Hb_000762_110 Hb_023771_020--Hb_000762_110 Hb_023771_020--Hb_006198_190 Hb_023771_020--Hb_000281_070 Hb_010620_050 Hb_010620_050 Hb_006198_190--Hb_010620_050 Hb_003847_040 Hb_003847_040 Hb_006198_190--Hb_003847_040 Hb_006916_050 Hb_006916_050 Hb_006198_190--Hb_006916_050 Hb_012506_020 Hb_012506_020 Hb_006198_190--Hb_012506_020 Hb_000069_360 Hb_000069_360 Hb_006198_190--Hb_000069_360 Hb_001427_210 Hb_001427_210 Hb_003470_070--Hb_001427_210 Hb_000562_070 Hb_000562_070 Hb_003470_070--Hb_000562_070 Hb_005181_040 Hb_005181_040 Hb_003470_070--Hb_005181_040 Hb_001040_070 Hb_001040_070 Hb_003470_070--Hb_001040_070 Hb_001411_030 Hb_001411_030 Hb_003470_070--Hb_001411_030 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.207 485.576 672.178 598.227 873.743 128.246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9301 58.8514 82.8203 78.4622 1003.35

CAGE analysis