Hb_006353_010

Information

Type -
Description -
Location Contig6353: 26942-33194
Sequence    

Annotation

kegg
ID rcu:RCOM_0010700
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID XP_012073072.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
swissprot
ID Q2XPU7
description Lupeol synthase OS=Ricinus communis PE=1 SV=1
trembl
ID A0A067KLJ2
description Terpene cyclase/mutase family member OS=Jatropha curcas GN=JCGZ_06063 PE=3 SV=1
Gene Ontology
ID GO:0042299
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51940: 29218-30193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006353_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
2 Hb_001271_040 0.0815390493 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
3 Hb_011924_010 0.0904760605 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
4 Hb_068447_010 0.090923144 - - protein with unknown function [Ricinus communis]
5 Hb_101778_020 0.0909721057 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
6 Hb_007676_070 0.0913832508 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
7 Hb_006586_020 0.091539885 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
8 Hb_000764_060 0.0916059536 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
9 Hb_000756_040 0.0923436777 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_008078_040 0.0926296041 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
11 Hb_000123_320 0.0929604536 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
12 Hb_003430_010 0.0933187805 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
13 Hb_005204_030 0.0936240845 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
14 Hb_003392_020 0.0951465552 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
15 Hb_006452_140 0.0951970198 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
16 Hb_006011_060 0.0953604581 - - -
17 Hb_001104_260 0.0967082677 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
18 Hb_001403_100 0.096867539 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
19 Hb_000977_160 0.0977410533 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
20 Hb_008248_010 0.098117758 - - -

Gene co-expression network

sample Hb_006353_010 Hb_006353_010 Hb_001271_040 Hb_001271_040 Hb_006353_010--Hb_001271_040 Hb_011924_010 Hb_011924_010 Hb_006353_010--Hb_011924_010 Hb_068447_010 Hb_068447_010 Hb_006353_010--Hb_068447_010 Hb_101778_020 Hb_101778_020 Hb_006353_010--Hb_101778_020 Hb_007676_070 Hb_007676_070 Hb_006353_010--Hb_007676_070 Hb_006586_020 Hb_006586_020 Hb_006353_010--Hb_006586_020 Hb_001271_040--Hb_101778_020 Hb_001271_040--Hb_006586_020 Hb_001271_040--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_001271_040--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_001271_040--Hb_003430_010 Hb_001271_040--Hb_068447_010 Hb_011924_010--Hb_101778_020 Hb_011924_010--Hb_006586_020 Hb_011924_010--Hb_068447_010 Hb_011924_010--Hb_007676_070 Hb_000764_060 Hb_000764_060 Hb_011924_010--Hb_000764_060 Hb_011924_010--Hb_000123_320 Hb_068447_010--Hb_007676_070 Hb_068447_010--Hb_000764_060 Hb_000756_040 Hb_000756_040 Hb_068447_010--Hb_000756_040 Hb_008078_040 Hb_008078_040 Hb_068447_010--Hb_008078_040 Hb_005204_030 Hb_005204_030 Hb_068447_010--Hb_005204_030 Hb_101778_020--Hb_006586_020 Hb_101778_020--Hb_000123_320 Hb_101778_020--Hb_003430_010 Hb_101778_020--Hb_068447_010 Hb_003392_020 Hb_003392_020 Hb_101778_020--Hb_003392_020 Hb_007676_070--Hb_000764_060 Hb_007676_070--Hb_000756_040 Hb_007676_070--Hb_008078_040 Hb_007676_070--Hb_005204_030 Hb_006586_020--Hb_000123_320 Hb_006586_020--Hb_003430_010 Hb_006586_020--Hb_003392_020 Hb_006011_060 Hb_006011_060 Hb_006586_020--Hb_006011_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.58386 0.0418084 0.0230676 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.7441 0.122317

CAGE analysis