Hb_006355_020

Information

Type -
Description -
Location Contig6355: 14468-28752
Sequence    

Annotation

kegg
ID rcu:RCOM_1722960
description hypothetical protein
nr
ID XP_012085174.1
description PREDICTED: CLIP-associated protein [Jatropha curcas]
swissprot
ID Q8RWY6
description CLIP-associated protein OS=Arabidopsis thaliana GN=CLASP PE=1 SV=1
trembl
ID A0A067JR47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17589 PE=4 SV=1
Gene Ontology
ID GO:0005515
description clip-associated protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51950: 14570-28631 , PASA_asmbl_51951: 26142-26626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_020 0.0 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
2 Hb_000284_230 0.0725651736 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
3 Hb_022250_100 0.0726833504 - - calnexin, putative [Ricinus communis]
4 Hb_162275_040 0.0747188879 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001194_020 0.076491514 - - microtubule associated protein xmap215, putative [Ricinus communis]
6 Hb_001059_130 0.083746722 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
7 Hb_000086_440 0.0867146382 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
8 Hb_073973_150 0.0869665955 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
9 Hb_004306_030 0.0883050835 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
10 Hb_000684_350 0.0886396246 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
11 Hb_000183_050 0.0897799748 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
12 Hb_000261_100 0.0918275109 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
13 Hb_000958_070 0.0939200425 - - hypothetical protein PRUPE_ppa007681mg [Prunus persica]
14 Hb_004701_050 0.0967185088 - - alpha1 family protein [Populus trichocarpa]
15 Hb_000608_300 0.0979693819 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
16 Hb_000562_050 0.0987345335 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
17 Hb_001109_060 0.1004014424 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000347_560 0.100813797 - - -
19 Hb_000069_570 0.1008964361 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
20 Hb_000820_150 0.1012864428 - - PREDICTED: ACT domain-containing protein ACR9-like [Jatropha curcas]

Gene co-expression network

sample Hb_006355_020 Hb_006355_020 Hb_000284_230 Hb_000284_230 Hb_006355_020--Hb_000284_230 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_001194_020 Hb_001194_020 Hb_006355_020--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_000041_300 Hb_000041_300 Hb_022250_100--Hb_000041_300 Hb_000684_350 Hb_000684_350 Hb_022250_100--Hb_000684_350 Hb_000958_070 Hb_000958_070 Hb_022250_100--Hb_000958_070 Hb_005250_010 Hb_005250_010 Hb_022250_100--Hb_005250_010 Hb_000562_050 Hb_000562_050 Hb_022250_100--Hb_000562_050 Hb_162275_040--Hb_000086_440 Hb_002539_110 Hb_002539_110 Hb_162275_040--Hb_002539_110 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_010272_010 Hb_010272_010 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_001194_020--Hb_008397_010 Hb_000640_070 Hb_000640_070 Hb_001194_020--Hb_000640_070 Hb_001194_020--Hb_073973_150 Hb_001194_020--Hb_001059_130 Hb_001059_130--Hb_000284_230 Hb_000588_080 Hb_000588_080 Hb_001059_130--Hb_000588_080 Hb_001059_130--Hb_000358_100 Hb_000020_160 Hb_000020_160 Hb_001059_130--Hb_000020_160 Hb_000086_440--Hb_001109_060 Hb_000086_440--Hb_005227_010 Hb_000035_170 Hb_000035_170 Hb_000086_440--Hb_000035_170 Hb_132840_110 Hb_132840_110 Hb_000086_440--Hb_132840_110 Hb_006501_090 Hb_006501_090 Hb_000086_440--Hb_006501_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9578 17.2161 15.7102 25.545 21.8626 18.9291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.35527 4.78187 7.37172 14.3831 31.6564

CAGE analysis