Hb_006355_030

Information

Type transcription factor
Description TF Family: Orphans
Location Contig6355: 37379-38389
Sequence    

Annotation

kegg
ID rcu:RCOM_1722740
description sensory transduction histidine kinase bacterial, putative
nr
ID XP_002521152.1
description sensory transduction histidine kinase bacterial, putative [Ricinus communis]
swissprot
ID Q9M8Y4
description Two-component response regulator ARR22 OS=Arabidopsis thaliana GN=ARR22 PE=2 SV=1
trembl
ID B9S583
description Sensory transduction histidine kinase bacterial, putative OS=Ricinus communis GN=RCOM_1722740 PE=4 SV=1
Gene Ontology
ID GO:0000160
description two-component response regulator arr22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_030 0.0 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
2 Hb_007520_040 0.1264519744 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
3 Hb_000445_450 0.1374435509 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
4 Hb_003057_080 0.1958053447 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
5 Hb_007072_020 0.2096067086 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
6 Hb_002311_240 0.2107431492 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
7 Hb_000500_110 0.2142814777 - - Blue copper protein precursor, putative [Ricinus communis]
8 Hb_003096_050 0.2160809591 - - conserved hypothetical protein [Ricinus communis]
9 Hb_153470_010 0.2240872917 - - PREDICTED: uncharacterized protein LOC104804963 [Tarenaya hassleriana]
10 Hb_003141_020 0.2316299507 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
11 Hb_010647_010 0.2368996414 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
12 Hb_080225_010 0.239243339 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
13 Hb_000816_120 0.2405936403 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
14 Hb_000140_160 0.2515449779 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
15 Hb_002161_020 0.2558747625 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
16 Hb_001190_060 0.2559726264 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
17 Hb_000045_230 0.2564421605 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
18 Hb_000213_130 0.256609812 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
19 Hb_000019_220 0.2646356411 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
20 Hb_000926_130 0.2665243216 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006355_030 Hb_006355_030 Hb_007520_040 Hb_007520_040 Hb_006355_030--Hb_007520_040 Hb_000445_450 Hb_000445_450 Hb_006355_030--Hb_000445_450 Hb_003057_080 Hb_003057_080 Hb_006355_030--Hb_003057_080 Hb_007072_020 Hb_007072_020 Hb_006355_030--Hb_007072_020 Hb_002311_240 Hb_002311_240 Hb_006355_030--Hb_002311_240 Hb_000500_110 Hb_000500_110 Hb_006355_030--Hb_000500_110 Hb_007520_040--Hb_000445_450 Hb_007520_040--Hb_000500_110 Hb_007520_040--Hb_003057_080 Hb_000213_130 Hb_000213_130 Hb_007520_040--Hb_000213_130 Hb_002876_310 Hb_002876_310 Hb_007520_040--Hb_002876_310 Hb_000445_450--Hb_002876_310 Hb_002249_180 Hb_002249_180 Hb_000445_450--Hb_002249_180 Hb_000445_450--Hb_000213_130 Hb_000445_450--Hb_007072_020 Hb_000045_230 Hb_000045_230 Hb_003057_080--Hb_000045_230 Hb_003057_080--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_003057_080--Hb_000019_220 Hb_000347_550 Hb_000347_550 Hb_003057_080--Hb_000347_550 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_000926_130 Hb_000926_130 Hb_007072_020--Hb_000926_130 Hb_007072_020--Hb_000500_110 Hb_000056_330 Hb_000056_330 Hb_007072_020--Hb_000056_330 Hb_007072_020--Hb_007520_040 Hb_007894_250 Hb_007894_250 Hb_007072_020--Hb_007894_250 Hb_010647_010 Hb_010647_010 Hb_002311_240--Hb_010647_010 Hb_002311_240--Hb_000019_220 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_002311_240--Hb_000347_550 Hb_000500_110--Hb_003057_080 Hb_030291_030 Hb_030291_030 Hb_000500_110--Hb_030291_030 Hb_000500_110--Hb_000926_130 Hb_000500_110--Hb_000045_230 Hb_000140_160 Hb_000140_160 Hb_000500_110--Hb_000140_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0328943 0.0384971 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.371059 0 2.18557 0

CAGE analysis