Hb_006355_040

Information

Type -
Description -
Location Contig6355: 62313-67158
Sequence    

Annotation

kegg
ID rcu:RCOM_1722530
description chaperonin-60kD, ch60, putative
nr
ID XP_012085173.1
description PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
swissprot
ID Q05046
description Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1
trembl
ID A0A067K3N8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17587 PE=3 SV=1
Gene Ontology
ID GO:0005737
description chaperonin cpn60- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51952: 62422-67153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_040 0.0 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
2 Hb_001718_030 0.0605809403 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
3 Hb_005843_140 0.0712499873 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
4 Hb_001188_030 0.0724140504 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
5 Hb_002968_040 0.0850988357 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
6 Hb_003669_020 0.0863159461 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
7 Hb_006198_070 0.0874227573 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
8 Hb_000424_200 0.0879278616 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
9 Hb_002811_170 0.090537261 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
10 Hb_000676_310 0.0905570078 - - BnaC09g40680D [Brassica napus]
11 Hb_002701_010 0.0916610563 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_002060_010 0.0938523687 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_001931_010 0.0963286211 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
14 Hb_000676_390 0.0963797539 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
15 Hb_000419_020 0.0969869948 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_044653_040 0.0974238505 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
17 Hb_000099_150 0.0975281719 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
18 Hb_006326_040 0.0984125129 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000538_120 0.1007690028 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
20 Hb_006256_030 0.1010581191 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]

Gene co-expression network

sample Hb_006355_040 Hb_006355_040 Hb_001718_030 Hb_001718_030 Hb_006355_040--Hb_001718_030 Hb_005843_140 Hb_005843_140 Hb_006355_040--Hb_005843_140 Hb_001188_030 Hb_001188_030 Hb_006355_040--Hb_001188_030 Hb_002968_040 Hb_002968_040 Hb_006355_040--Hb_002968_040 Hb_003669_020 Hb_003669_020 Hb_006355_040--Hb_003669_020 Hb_006198_070 Hb_006198_070 Hb_006355_040--Hb_006198_070 Hb_001718_030--Hb_001188_030 Hb_002060_010 Hb_002060_010 Hb_001718_030--Hb_002060_010 Hb_001431_080 Hb_001431_080 Hb_001718_030--Hb_001431_080 Hb_000676_390 Hb_000676_390 Hb_001718_030--Hb_000676_390 Hb_006326_040 Hb_006326_040 Hb_001718_030--Hb_006326_040 Hb_005843_140--Hb_006198_070 Hb_044653_040 Hb_044653_040 Hb_005843_140--Hb_044653_040 Hb_005843_140--Hb_003669_020 Hb_005843_140--Hb_002968_040 Hb_000505_130 Hb_000505_130 Hb_005843_140--Hb_000505_130 Hb_001188_030--Hb_000676_390 Hb_001188_030--Hb_001431_080 Hb_015299_030 Hb_015299_030 Hb_001188_030--Hb_015299_030 Hb_001931_010 Hb_001931_010 Hb_001188_030--Hb_001931_010 Hb_000946_090 Hb_000946_090 Hb_002968_040--Hb_000946_090 Hb_012799_170 Hb_012799_170 Hb_002968_040--Hb_012799_170 Hb_002968_040--Hb_044653_040 Hb_003622_030 Hb_003622_030 Hb_002968_040--Hb_003622_030 Hb_003669_020--Hb_044653_040 Hb_003669_020--Hb_006198_070 Hb_000310_020 Hb_000310_020 Hb_003669_020--Hb_000310_020 Hb_011512_070 Hb_011512_070 Hb_003669_020--Hb_011512_070 Hb_003669_020--Hb_000505_130 Hb_026527_050 Hb_026527_050 Hb_006198_070--Hb_026527_050 Hb_003540_240 Hb_003540_240 Hb_006198_070--Hb_003540_240 Hb_004057_010 Hb_004057_010 Hb_006198_070--Hb_004057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.8395 9.67989 19.3074 14.02 6.66514 8.00828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4187 38.5754 18.7272 15.2898 11.8167

CAGE analysis