Hb_006355_050

Information

Type -
Description -
Location Contig6355: 71487-73371
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_050 0.0 - - -
2 Hb_000083_040 0.1596491861 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000705_280 0.1683314663 - - PREDICTED: uncharacterized protein LOC104601116 [Nelumbo nucifera]
4 Hb_007177_010 0.1760882801 - - -
5 Hb_000638_040 0.1918009521 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
6 Hb_061637_010 0.1998922144 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_021156_030 0.2022549074 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
8 Hb_074238_010 0.2082528215 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
9 Hb_005020_010 0.2082821826 - - -
10 Hb_005142_010 0.2086712645 - - -
11 Hb_005841_030 0.2104234871 - - -
12 Hb_154340_010 0.2112026968 - - truncated nitrate transporter [Fragaria vesca]
13 Hb_060455_010 0.2116120317 - - 50 kDa protein [Hevea brasiliensis]
14 Hb_008839_030 0.212440869 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000572_050 0.2139526832 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
16 Hb_000038_190 0.2139646739 - - -
17 Hb_000046_150 0.2139646739 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000047_120 0.2139646739 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000062_120 0.2139646739 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
20 Hb_000094_140 0.2139646739 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]

Gene co-expression network

sample Hb_006355_050 Hb_006355_050 Hb_000083_040 Hb_000083_040 Hb_006355_050--Hb_000083_040 Hb_000705_280 Hb_000705_280 Hb_006355_050--Hb_000705_280 Hb_007177_010 Hb_007177_010 Hb_006355_050--Hb_007177_010 Hb_000638_040 Hb_000638_040 Hb_006355_050--Hb_000638_040 Hb_061637_010 Hb_061637_010 Hb_006355_050--Hb_061637_010 Hb_021156_030 Hb_021156_030 Hb_006355_050--Hb_021156_030 Hb_074238_010 Hb_074238_010 Hb_000083_040--Hb_074238_010 Hb_000083_040--Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_000083_040--Hb_005020_010 Hb_154340_010 Hb_154340_010 Hb_000083_040--Hb_154340_010 Hb_000083_040--Hb_000705_280 Hb_000440_030 Hb_000440_030 Hb_000705_280--Hb_000440_030 Hb_000705_280--Hb_000638_040 Hb_060455_010 Hb_060455_010 Hb_000705_280--Hb_060455_010 Hb_008839_030 Hb_008839_030 Hb_000705_280--Hb_008839_030 Hb_007177_010--Hb_005020_010 Hb_000572_050 Hb_000572_050 Hb_007177_010--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_007177_010--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_007177_010--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_007177_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_007177_010--Hb_001545_250 Hb_005142_010 Hb_005142_010 Hb_000638_040--Hb_005142_010 Hb_005841_030 Hb_005841_030 Hb_000638_040--Hb_005841_030 Hb_000638_040--Hb_000572_050 Hb_000638_040--Hb_001403_030 Hb_000638_040--Hb_000971_060 Hb_000638_040--Hb_000201_020 Hb_061637_010--Hb_007177_010 Hb_061637_010--Hb_000572_050 Hb_061637_010--Hb_005841_030 Hb_061637_010--Hb_005142_010 Hb_061637_010--Hb_001403_030 Hb_061637_010--Hb_000971_060 Hb_000211_060 Hb_000211_060 Hb_021156_030--Hb_000211_060 Hb_000661_190 Hb_000661_190 Hb_021156_030--Hb_000661_190 Hb_000427_120 Hb_000427_120 Hb_021156_030--Hb_000427_120 Hb_007768_030 Hb_007768_030 Hb_021156_030--Hb_007768_030 Hb_000038_190 Hb_000038_190 Hb_021156_030--Hb_000038_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0824755 0 0 0.0630566 0.0657965 0.058013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 3.51446 0.0723027 0

CAGE analysis