Hb_006355_060

Information

Type -
Description -
Location Contig6355: 77923-79261
Sequence    

Annotation

kegg
ID mdm:103445431
description transcription factor PIF1-like
nr
ID XP_012085172.1
description PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17586 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor pif1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51953: 78372-79939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_060 0.0 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
2 Hb_003097_220 0.0836400242 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
3 Hb_002613_040 0.0967776959 - - phosphate translocator-related family protein [Populus trichocarpa]
4 Hb_003147_040 0.1268393433 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
5 Hb_001232_040 0.1293631899 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
6 Hb_163950_050 0.1299214129 - - protein binding protein, putative [Ricinus communis]
7 Hb_058471_010 0.1322081909 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
8 Hb_114917_010 0.1334361254 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
9 Hb_002119_110 0.1371547232 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
10 Hb_005725_160 0.1378700545 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
11 Hb_005183_100 0.1378711385 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
12 Hb_000429_160 0.1391300432 - - PREDICTED: uncharacterized protein LOC105645177 [Jatropha curcas]
13 Hb_005723_090 0.1409559498 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001950_100 0.1417121624 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
15 Hb_001242_040 0.1421859781 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
16 Hb_028227_040 0.1431728988 - - PREDICTED: uncharacterized protein LOC105645005 [Jatropha curcas]
17 Hb_000622_030 0.1454210031 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
18 Hb_012239_060 0.1456559191 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
19 Hb_009522_020 0.1472901552 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
20 Hb_001296_060 0.1474548855 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006355_060 Hb_006355_060 Hb_003097_220 Hb_003097_220 Hb_006355_060--Hb_003097_220 Hb_002613_040 Hb_002613_040 Hb_006355_060--Hb_002613_040 Hb_003147_040 Hb_003147_040 Hb_006355_060--Hb_003147_040 Hb_001232_040 Hb_001232_040 Hb_006355_060--Hb_001232_040 Hb_163950_050 Hb_163950_050 Hb_006355_060--Hb_163950_050 Hb_058471_010 Hb_058471_010 Hb_006355_060--Hb_058471_010 Hb_003097_220--Hb_002613_040 Hb_114917_010 Hb_114917_010 Hb_003097_220--Hb_114917_010 Hb_012239_060 Hb_012239_060 Hb_003097_220--Hb_012239_060 Hb_005057_030 Hb_005057_030 Hb_003097_220--Hb_005057_030 Hb_005725_160 Hb_005725_160 Hb_003097_220--Hb_005725_160 Hb_000103_130 Hb_000103_130 Hb_002613_040--Hb_000103_130 Hb_002613_040--Hb_163950_050 Hb_002613_040--Hb_114917_010 Hb_006750_010 Hb_006750_010 Hb_002613_040--Hb_006750_010 Hb_000659_040 Hb_000659_040 Hb_003147_040--Hb_000659_040 Hb_002095_020 Hb_002095_020 Hb_003147_040--Hb_002095_020 Hb_001369_390 Hb_001369_390 Hb_003147_040--Hb_001369_390 Hb_002902_070 Hb_002902_070 Hb_003147_040--Hb_002902_070 Hb_000473_100 Hb_000473_100 Hb_003147_040--Hb_000473_100 Hb_000868_130 Hb_000868_130 Hb_003147_040--Hb_000868_130 Hb_001158_250 Hb_001158_250 Hb_001232_040--Hb_001158_250 Hb_000622_030 Hb_000622_030 Hb_001232_040--Hb_000622_030 Hb_000271_130 Hb_000271_130 Hb_001232_040--Hb_000271_130 Hb_000000_290 Hb_000000_290 Hb_001232_040--Hb_000000_290 Hb_001950_100 Hb_001950_100 Hb_001232_040--Hb_001950_100 Hb_005723_090 Hb_005723_090 Hb_001232_040--Hb_005723_090 Hb_015934_090 Hb_015934_090 Hb_163950_050--Hb_015934_090 Hb_163950_050--Hb_000103_130 Hb_002986_030 Hb_002986_030 Hb_163950_050--Hb_002986_030 Hb_004032_190 Hb_004032_190 Hb_163950_050--Hb_004032_190 Hb_001206_100 Hb_001206_100 Hb_163950_050--Hb_001206_100 Hb_001366_300 Hb_001366_300 Hb_058471_010--Hb_001366_300 Hb_000000_050 Hb_000000_050 Hb_058471_010--Hb_000000_050 Hb_058471_010--Hb_001232_040 Hb_005305_040 Hb_005305_040 Hb_058471_010--Hb_005305_040 Hb_058471_010--Hb_163950_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106851 1.37364 1.27652 3.75606 0 0.0249513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0515101 0 0.223509 0.456315 4.05716

CAGE analysis