Hb_006355_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig6355: 91079-95650
Sequence    

Annotation

kegg
ID rcu:RCOM_1722420
description Phytochrome-interacting factor, putative
nr
ID XP_002521150.1
description Phytochrome-interacting factor, putative [Ricinus communis]
swissprot
ID Q8GZM7
description Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
trembl
ID B9S581
description Phytochrome-interacting factor, putative OS=Ricinus communis GN=RCOM_1722420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description phytochrome interacting factor 3-like isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51954: 91911-95799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_070 0.0 transcription factor TF Family: bHLH Phytochrome-interacting factor, putative [Ricinus communis]
2 Hb_038833_010 0.0843327847 - - polyprotein [Ananas comosus]
3 Hb_004307_070 0.1058075933 - - kinase, putative [Ricinus communis]
4 Hb_000245_100 0.1197988101 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
5 Hb_003858_060 0.1277718127 - - Germin-like protein subfamily 1 member 18 [Theobroma cacao]
6 Hb_002876_280 0.1356735405 - - hypothetical protein RCOM_0686540 [Ricinus communis]
7 Hb_001629_050 0.1376532256 - - structural constituent of cell wall, putative [Ricinus communis]
8 Hb_004204_220 0.140178462 - - -
9 Hb_002308_060 0.1410558185 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
10 Hb_002888_050 0.1410627892 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
11 Hb_001277_380 0.1439023437 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [Tarenaya hassleriana]
12 Hb_002814_050 0.144878484 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
13 Hb_094437_020 0.1457476759 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_001221_470 0.1499315613 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
15 Hb_060198_010 0.1500105988 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_001143_140 0.1511928995 - - Aldehyde dehydrogenase, putative [Ricinus communis]
17 Hb_001778_040 0.153672089 - - hypothetical protein VITISV_021035 [Vitis vinifera]
18 Hb_000392_490 0.1575688846 - - PREDICTED: uncharacterized protein LOC105640495 isoform X1 [Jatropha curcas]
19 Hb_016564_050 0.1592673232 - - -
20 Hb_092029_010 0.1632794497 - - Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_006355_070 Hb_006355_070 Hb_038833_010 Hb_038833_010 Hb_006355_070--Hb_038833_010 Hb_004307_070 Hb_004307_070 Hb_006355_070--Hb_004307_070 Hb_000245_100 Hb_000245_100 Hb_006355_070--Hb_000245_100 Hb_003858_060 Hb_003858_060 Hb_006355_070--Hb_003858_060 Hb_002876_280 Hb_002876_280 Hb_006355_070--Hb_002876_280 Hb_001629_050 Hb_001629_050 Hb_006355_070--Hb_001629_050 Hb_170878_060 Hb_170878_060 Hb_038833_010--Hb_170878_060 Hb_002308_060 Hb_002308_060 Hb_038833_010--Hb_002308_060 Hb_028872_100 Hb_028872_100 Hb_038833_010--Hb_028872_100 Hb_158534_010 Hb_158534_010 Hb_038833_010--Hb_158534_010 Hb_001277_380 Hb_001277_380 Hb_038833_010--Hb_001277_380 Hb_001143_140 Hb_001143_140 Hb_004307_070--Hb_001143_140 Hb_000347_420 Hb_000347_420 Hb_004307_070--Hb_000347_420 Hb_000095_070 Hb_000095_070 Hb_004307_070--Hb_000095_070 Hb_009641_040 Hb_009641_040 Hb_004307_070--Hb_009641_040 Hb_000994_100 Hb_000994_100 Hb_004307_070--Hb_000994_100 Hb_005329_030 Hb_005329_030 Hb_000245_100--Hb_005329_030 Hb_037684_010 Hb_037684_010 Hb_000245_100--Hb_037684_010 Hb_000245_100--Hb_003858_060 Hb_004204_220 Hb_004204_220 Hb_000245_100--Hb_004204_220 Hb_009222_080 Hb_009222_080 Hb_000245_100--Hb_009222_080 Hb_003858_060--Hb_004204_220 Hb_000834_100 Hb_000834_100 Hb_003858_060--Hb_000834_100 Hb_003858_060--Hb_002876_280 Hb_000856_210 Hb_000856_210 Hb_003858_060--Hb_000856_210 Hb_094437_020 Hb_094437_020 Hb_003858_060--Hb_094437_020 Hb_003858_060--Hb_001629_050 Hb_011432_010 Hb_011432_010 Hb_002876_280--Hb_011432_010 Hb_002876_280--Hb_000856_210 Hb_002973_130 Hb_002973_130 Hb_002876_280--Hb_002973_130 Hb_037519_010 Hb_037519_010 Hb_002876_280--Hb_037519_010 Hb_145080_010 Hb_145080_010 Hb_002876_280--Hb_145080_010 Hb_001629_050--Hb_004204_220 Hb_167211_010 Hb_167211_010 Hb_001629_050--Hb_167211_010 Hb_000392_490 Hb_000392_490 Hb_001629_050--Hb_000392_490 Hb_002095_020 Hb_002095_020 Hb_001629_050--Hb_002095_020 Hb_001778_040 Hb_001778_040 Hb_001629_050--Hb_001778_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.45427 0.255832 2.32686 0 0.0243272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.70941 3.01108

CAGE analysis