Hb_006356_010

Information

Type -
Description -
Location Contig6356: 2946-5877
Sequence    

Annotation

kegg
ID tcc:TCM_034915
description Receptor protein kinase, putative
nr
ID XP_012068364.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006356_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_001587_050 0.0613182152 - - -
3 Hb_089568_010 0.0724360966 - - ferric reductase oxidase [Manihot esculenta]
4 Hb_000987_160 0.1227452896 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_090889_010 0.1371336849 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
6 Hb_000042_310 0.1467264945 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_004374_100 0.1571227207 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
8 Hb_000280_030 0.159566103 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
9 Hb_144045_010 0.1624350975 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
10 Hb_000039_190 0.1650819645 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
11 Hb_000638_270 0.1664467301 - - -
12 Hb_080033_020 0.1945988935 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
13 Hb_000049_170 0.1976883009 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001040_090 0.200292417 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
15 Hb_003302_010 0.2029194754 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
16 Hb_015824_010 0.2043386 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
17 Hb_000227_260 0.2109264089 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
18 Hb_001508_030 0.2124960201 - - hypothetical protein VITISV_029808 [Vitis vinifera]
19 Hb_015978_090 0.212952571 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
20 Hb_002276_030 0.2133571693 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_006356_010 Hb_006356_010 Hb_001587_050 Hb_001587_050 Hb_006356_010--Hb_001587_050 Hb_089568_010 Hb_089568_010 Hb_006356_010--Hb_089568_010 Hb_000987_160 Hb_000987_160 Hb_006356_010--Hb_000987_160 Hb_090889_010 Hb_090889_010 Hb_006356_010--Hb_090889_010 Hb_000042_310 Hb_000042_310 Hb_006356_010--Hb_000042_310 Hb_004374_100 Hb_004374_100 Hb_006356_010--Hb_004374_100 Hb_001587_050--Hb_089568_010 Hb_144045_010 Hb_144045_010 Hb_001587_050--Hb_144045_010 Hb_080033_020 Hb_080033_020 Hb_001587_050--Hb_080033_020 Hb_001587_050--Hb_000042_310 Hb_001587_050--Hb_090889_010 Hb_089568_010--Hb_090889_010 Hb_003302_010 Hb_003302_010 Hb_089568_010--Hb_003302_010 Hb_089568_010--Hb_080033_020 Hb_089568_010--Hb_144045_010 Hb_003050_010 Hb_003050_010 Hb_000987_160--Hb_003050_010 Hb_000334_160 Hb_000334_160 Hb_000987_160--Hb_000334_160 Hb_000039_190 Hb_000039_190 Hb_000987_160--Hb_000039_190 Hb_001285_020 Hb_001285_020 Hb_000987_160--Hb_001285_020 Hb_000987_160--Hb_089568_010 Hb_003062_020 Hb_003062_020 Hb_090889_010--Hb_003062_020 Hb_012807_070 Hb_012807_070 Hb_090889_010--Hb_012807_070 Hb_090889_010--Hb_000039_190 Hb_000042_310--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_000042_310--Hb_000280_030 Hb_015824_010 Hb_015824_010 Hb_000042_310--Hb_015824_010 Hb_000042_310--Hb_144045_010 Hb_000638_270 Hb_000638_270 Hb_000042_310--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_000042_310--Hb_000705_010 Hb_004374_100--Hb_000280_030 Hb_004374_100--Hb_015824_010 Hb_004374_100--Hb_000638_270 Hb_004374_100--Hb_000705_010 Hb_004374_100--Hb_144045_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00594407 0.0163184 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00511417 0.0274306

CAGE analysis