Hb_006360_030

Information

Type -
Description -
Location Contig6360: 42417-48343
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51959: 42300-45531 , PASA_asmbl_51960: 42300-44122 , PASA_asmbl_51961: 43039-43257 , PASA_asmbl_51962: 43743-45482
cDNA
(Sanger)
(ID:Location)		 002_J03.ab1: 42328-45531

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006360_030 0.0 - - -
2 Hb_002783_270 0.1036366747 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
3 Hb_004096_090 0.1051151412 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
4 Hb_021419_020 0.111705842 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
5 Hb_001341_090 0.113053156 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
6 Hb_005054_060 0.1143205338 - - PREDICTED: syntaxin-81 [Jatropha curcas]
7 Hb_000690_190 0.1146193966 - - 40S ribosomal protein S7, putative [Ricinus communis]
8 Hb_002811_260 0.1152875493 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
9 Hb_001476_070 0.1209503646 - - MinE protein [Manihot esculenta]
10 Hb_001234_080 0.1240907767 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
11 Hb_003894_070 0.1242918939 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
12 Hb_010315_060 0.1243853954 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
13 Hb_000160_060 0.1243933968 - - unknown [Populus trichocarpa]
14 Hb_000562_030 0.1249761695 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001902_130 0.1250114658 - - 60S ribosomal protein L36-2 [Morus notabilis]
16 Hb_001817_090 0.1250491258 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
17 Hb_012016_010 0.1258177868 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
18 Hb_014720_040 0.1261143559 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
19 Hb_003992_270 0.1298922653 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
20 Hb_000768_170 0.1299667243 - - hypothetical protein JCGZ_02624 [Jatropha curcas]

Gene co-expression network

sample Hb_006360_030 Hb_006360_030 Hb_002783_270 Hb_002783_270 Hb_006360_030--Hb_002783_270 Hb_004096_090 Hb_004096_090 Hb_006360_030--Hb_004096_090 Hb_021419_020 Hb_021419_020 Hb_006360_030--Hb_021419_020 Hb_001341_090 Hb_001341_090 Hb_006360_030--Hb_001341_090 Hb_005054_060 Hb_005054_060 Hb_006360_030--Hb_005054_060 Hb_000690_190 Hb_000690_190 Hb_006360_030--Hb_000690_190 Hb_007044_130 Hb_007044_130 Hb_002783_270--Hb_007044_130 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_006925_040 Hb_006925_040 Hb_002783_270--Hb_006925_040 Hb_003894_070 Hb_003894_070 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_002783_270--Hb_001341_090 Hb_001195_480 Hb_001195_480 Hb_004096_090--Hb_001195_480 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_009694_010 Hb_009694_010 Hb_004096_090--Hb_009694_010 Hb_004096_090--Hb_005054_060 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_004787_060 Hb_004787_060 Hb_021419_020--Hb_004787_060 Hb_001504_020 Hb_001504_020 Hb_021419_020--Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_021419_020--Hb_002112_020 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_005045_060 Hb_005045_060 Hb_001341_090--Hb_005045_060 Hb_134949_020 Hb_134949_020 Hb_001341_090--Hb_134949_020 Hb_000996_140 Hb_000996_140 Hb_001341_090--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_001341_090--Hb_002864_050 Hb_000527_060 Hb_000527_060 Hb_001341_090--Hb_000527_060 Hb_002343_060 Hb_002343_060 Hb_001341_090--Hb_002343_060 Hb_000815_320 Hb_000815_320 Hb_005054_060--Hb_000815_320 Hb_003057_090 Hb_003057_090 Hb_005054_060--Hb_003057_090 Hb_005054_060--Hb_009694_010 Hb_001821_010 Hb_001821_010 Hb_005054_060--Hb_001821_010 Hb_000465_090 Hb_000465_090 Hb_005054_060--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_000690_190--Hb_002946_190 Hb_002307_180 Hb_002307_180 Hb_000690_190--Hb_002307_180 Hb_000599_260 Hb_000599_260 Hb_000690_190--Hb_000599_260 Hb_007878_010 Hb_007878_010 Hb_000690_190--Hb_007878_010 Hb_161574_020 Hb_161574_020 Hb_000690_190--Hb_161574_020 Hb_002171_060 Hb_002171_060 Hb_000690_190--Hb_002171_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.14055 1.79859 8.13925 5.97231 6.84804 6.53277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.63361 14.0229 3.46914 1.42066 3.06592

CAGE analysis