Hb_006370_040

Information

Type -
Description -
Location Contig6370: 16231-17166
Sequence    

Annotation

kegg
ID pda:103699727
description uncharacterized LOC103699727
nr
ID XP_012088539.1
description PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006370_040 0.0 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
2 Hb_003861_020 0.2491916409 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
3 Hb_145915_010 0.2574407455 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
4 Hb_002419_030 0.2637696818 - - -
5 Hb_003170_040 0.2639313033 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
6 Hb_009270_010 0.2684196611 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
7 Hb_009355_040 0.2697801796 - - ATP binding protein, putative [Ricinus communis]
8 Hb_012180_020 0.2700526886 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
9 Hb_001439_140 0.2711340606 - - pattern formation protein, putative [Ricinus communis]
10 Hb_002791_010 0.2763888123 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
11 Hb_000136_040 0.2773032178 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
12 Hb_006472_020 0.2785580596 - - heat shock protein [Cicer arietinum]
13 Hb_000229_030 0.2844312367 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
14 Hb_000616_020 0.2849411189 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_003544_180 0.2857247916 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
16 Hb_003498_130 0.2863241842 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
17 Hb_017075_010 0.2889355268 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
18 Hb_090855_010 0.2894974903 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_000959_090 0.2925145309 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000832_300 0.2930357356 - - -

Gene co-expression network

sample Hb_006370_040 Hb_006370_040 Hb_003861_020 Hb_003861_020 Hb_006370_040--Hb_003861_020 Hb_145915_010 Hb_145915_010 Hb_006370_040--Hb_145915_010 Hb_002419_030 Hb_002419_030 Hb_006370_040--Hb_002419_030 Hb_003170_040 Hb_003170_040 Hb_006370_040--Hb_003170_040 Hb_009270_010 Hb_009270_010 Hb_006370_040--Hb_009270_010 Hb_009355_040 Hb_009355_040 Hb_006370_040--Hb_009355_040 Hb_001703_120 Hb_001703_120 Hb_003861_020--Hb_001703_120 Hb_000362_120 Hb_000362_120 Hb_003861_020--Hb_000362_120 Hb_012979_020 Hb_012979_020 Hb_003861_020--Hb_012979_020 Hb_000136_040 Hb_000136_040 Hb_003861_020--Hb_000136_040 Hb_010480_030 Hb_010480_030 Hb_003861_020--Hb_010480_030 Hb_012180_020 Hb_012180_020 Hb_003861_020--Hb_012180_020 Hb_145915_010--Hb_003170_040 Hb_020665_010 Hb_020665_010 Hb_145915_010--Hb_020665_010 Hb_012286_010 Hb_012286_010 Hb_145915_010--Hb_012286_010 Hb_145915_010--Hb_009270_010 Hb_002276_060 Hb_002276_060 Hb_145915_010--Hb_002276_060 Hb_000661_030 Hb_000661_030 Hb_145915_010--Hb_000661_030 Hb_001010_070 Hb_001010_070 Hb_002419_030--Hb_001010_070 Hb_002419_030--Hb_009270_010 Hb_002419_030--Hb_000136_040 Hb_004448_090 Hb_004448_090 Hb_002419_030--Hb_004448_090 Hb_000470_080 Hb_000470_080 Hb_002419_030--Hb_000470_080 Hb_003206_020 Hb_003206_020 Hb_002419_030--Hb_003206_020 Hb_007545_030 Hb_007545_030 Hb_003170_040--Hb_007545_030 Hb_003001_150 Hb_003001_150 Hb_003170_040--Hb_003001_150 Hb_003170_040--Hb_002276_060 Hb_001439_140 Hb_001439_140 Hb_003170_040--Hb_001439_140 Hb_000072_150 Hb_000072_150 Hb_003170_040--Hb_000072_150 Hb_001117_170 Hb_001117_170 Hb_009270_010--Hb_001117_170 Hb_009270_010--Hb_020665_010 Hb_000005_190 Hb_000005_190 Hb_009270_010--Hb_000005_190 Hb_188126_010 Hb_188126_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_017438_020 Hb_017438_020 Hb_009355_040--Hb_017438_020 Hb_179022_010 Hb_179022_010 Hb_009355_040--Hb_179022_010 Hb_006452_090 Hb_006452_090 Hb_009355_040--Hb_006452_090 Hb_002872_020 Hb_002872_020 Hb_009355_040--Hb_002872_020 Hb_007364_010 Hb_007364_010 Hb_009355_040--Hb_007364_010 Hb_000206_150 Hb_000206_150 Hb_009355_040--Hb_000206_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117385 0.0560978 0 0 0.0648034 0.0853554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0769282 0 0.108353 0.122848 0.12014

CAGE analysis