Hb_006371_010

Information

Type -
Description -
Location Contig6371: 3206-15108
Sequence    

Annotation

kegg
ID rcu:RCOM_0905040
description multidrug resistance pump, putative
nr
ID KDP20756.1
description hypothetical protein JCGZ_21227 [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067JAE2
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_21227 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006371_010 0.0 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
2 Hb_002025_200 0.1385935056 - - -
3 Hb_007632_220 0.1460472175 - - RNA-binding protein, putative [Ricinus communis]
4 Hb_000316_050 0.1516958369 - - enoyl-ACP reductase [Vernicia fordii]
5 Hb_000505_010 0.1534871739 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
6 Hb_000062_150 0.1564134742 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
7 Hb_000173_230 0.1616867026 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
8 Hb_001832_190 0.1621217051 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006130_010 0.1638978223 - - PREDICTED: CTP synthase [Jatropha curcas]
10 Hb_012799_180 0.1640792225 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
11 Hb_000208_120 0.1647274342 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
12 Hb_015198_020 0.1648968146 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006472_010 0.1656508458 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
14 Hb_007672_050 0.1663512818 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
15 Hb_024570_010 0.1665539385 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
16 Hb_000236_070 0.1668712002 - - conserved hypothetical protein [Ricinus communis]
17 Hb_116349_100 0.1687685605 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
18 Hb_001019_190 0.1695485702 - - conserved hypothetical protein [Ricinus communis]
19 Hb_101832_010 0.1708537744 - - nitrate transporter, putative [Ricinus communis]
20 Hb_000922_330 0.1708622526 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_006371_010 Hb_006371_010 Hb_002025_200 Hb_002025_200 Hb_006371_010--Hb_002025_200 Hb_007632_220 Hb_007632_220 Hb_006371_010--Hb_007632_220 Hb_000316_050 Hb_000316_050 Hb_006371_010--Hb_000316_050 Hb_000505_010 Hb_000505_010 Hb_006371_010--Hb_000505_010 Hb_000062_150 Hb_000062_150 Hb_006371_010--Hb_000062_150 Hb_000173_230 Hb_000173_230 Hb_006371_010--Hb_000173_230 Hb_002681_070 Hb_002681_070 Hb_002025_200--Hb_002681_070 Hb_002783_260 Hb_002783_260 Hb_002025_200--Hb_002783_260 Hb_002193_010 Hb_002193_010 Hb_002025_200--Hb_002193_010 Hb_000574_390 Hb_000574_390 Hb_002025_200--Hb_000574_390 Hb_012799_180 Hb_012799_180 Hb_002025_200--Hb_012799_180 Hb_001019_190 Hb_001019_190 Hb_002025_200--Hb_001019_190 Hb_085781_010 Hb_085781_010 Hb_007632_220--Hb_085781_010 Hb_000047_030 Hb_000047_030 Hb_007632_220--Hb_000047_030 Hb_007632_220--Hb_000574_390 Hb_013405_030 Hb_013405_030 Hb_007632_220--Hb_013405_030 Hb_002686_290 Hb_002686_290 Hb_007632_220--Hb_002686_290 Hb_015198_020 Hb_015198_020 Hb_007632_220--Hb_015198_020 Hb_000096_090 Hb_000096_090 Hb_000316_050--Hb_000096_090 Hb_000236_070 Hb_000236_070 Hb_000316_050--Hb_000236_070 Hb_001959_070 Hb_001959_070 Hb_000316_050--Hb_001959_070 Hb_000648_110 Hb_000648_110 Hb_000316_050--Hb_000648_110 Hb_000316_050--Hb_000505_010 Hb_000023_140 Hb_000023_140 Hb_000316_050--Hb_000023_140 Hb_001396_180 Hb_001396_180 Hb_000505_010--Hb_001396_180 Hb_011316_040 Hb_011316_040 Hb_000505_010--Hb_011316_040 Hb_000505_010--Hb_000236_070 Hb_003376_040 Hb_003376_040 Hb_000505_010--Hb_003376_040 Hb_000505_010--Hb_000096_090 Hb_116349_100 Hb_116349_100 Hb_000505_010--Hb_116349_100 Hb_000062_150--Hb_000173_230 Hb_006111_070 Hb_006111_070 Hb_000062_150--Hb_006111_070 Hb_188279_010 Hb_188279_010 Hb_000062_150--Hb_188279_010 Hb_000056_040 Hb_000056_040 Hb_000062_150--Hb_000056_040 Hb_001221_170 Hb_001221_170 Hb_000062_150--Hb_001221_170 Hb_000173_230--Hb_188279_010 Hb_009048_040 Hb_009048_040 Hb_000173_230--Hb_009048_040 Hb_000934_270 Hb_000934_270 Hb_000173_230--Hb_000934_270 Hb_001675_180 Hb_001675_180 Hb_000173_230--Hb_001675_180 Hb_000173_230--Hb_085781_010 Hb_000173_230--Hb_013405_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27123 0.131084 0.431004 0.308594 1.38189 1.22636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.911115 0.81731 1.66644 0.130989 1.58386

CAGE analysis