Hb_006373_040

Information

Type -
Description -
Location Contig6373: 55203-56052
Sequence    

Annotation

kegg
ID dosa:Os08t0206400-01
description Os08g0206400; Similar to Potassium transporter 18.
nr
ID XP_009613140.1
description PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M0S4K6
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0016021
description k+ uptake permease 11 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51989: 10941-56180 , PASA_asmbl_51993: 56305-56522 , PASA_asmbl_51994: 56536-56819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006373_040 0.0 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
2 Hb_018292_010 0.106881672 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
3 Hb_004117_160 0.1089392597 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
4 Hb_005463_110 0.1102777413 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
5 Hb_009193_120 0.1119507432 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
6 Hb_007919_100 0.1169431163 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
7 Hb_002414_050 0.1182201295 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
8 Hb_017966_020 0.1194075862 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
9 Hb_000062_020 0.1196513486 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_001449_040 0.1207997756 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
11 Hb_001369_750 0.1217344735 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
12 Hb_011918_040 0.1222740143 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
13 Hb_003544_160 0.1223213945 - - -
14 Hb_152202_010 0.1235786901 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
15 Hb_000718_080 0.1236301586 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
16 Hb_006909_070 0.1239163123 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000270_030 0.1240186846 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
18 Hb_002965_090 0.1246756422 - - importin alpha, putative [Ricinus communis]
19 Hb_001999_210 0.1250752589 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
20 Hb_000362_150 0.1259627279 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_006373_040 Hb_006373_040 Hb_018292_010 Hb_018292_010 Hb_006373_040--Hb_018292_010 Hb_004117_160 Hb_004117_160 Hb_006373_040--Hb_004117_160 Hb_005463_110 Hb_005463_110 Hb_006373_040--Hb_005463_110 Hb_009193_120 Hb_009193_120 Hb_006373_040--Hb_009193_120 Hb_007919_100 Hb_007919_100 Hb_006373_040--Hb_007919_100 Hb_002414_050 Hb_002414_050 Hb_006373_040--Hb_002414_050 Hb_022833_100 Hb_022833_100 Hb_018292_010--Hb_022833_100 Hb_001571_050 Hb_001571_050 Hb_018292_010--Hb_001571_050 Hb_002965_090 Hb_002965_090 Hb_018292_010--Hb_002965_090 Hb_018292_010--Hb_005463_110 Hb_000174_180 Hb_000174_180 Hb_018292_010--Hb_000174_180 Hb_002289_080 Hb_002289_080 Hb_018292_010--Hb_002289_080 Hb_000107_200 Hb_000107_200 Hb_004117_160--Hb_000107_200 Hb_001948_130 Hb_001948_130 Hb_004117_160--Hb_001948_130 Hb_003010_020 Hb_003010_020 Hb_004117_160--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_004117_160--Hb_032050_040 Hb_000022_020 Hb_000022_020 Hb_004117_160--Hb_000022_020 Hb_152202_010 Hb_152202_010 Hb_004117_160--Hb_152202_010 Hb_001999_210 Hb_001999_210 Hb_005463_110--Hb_001999_210 Hb_003544_160 Hb_003544_160 Hb_005463_110--Hb_003544_160 Hb_005463_110--Hb_002414_050 Hb_001662_100 Hb_001662_100 Hb_005463_110--Hb_001662_100 Hb_001369_750 Hb_001369_750 Hb_005463_110--Hb_001369_750 Hb_001343_040 Hb_001343_040 Hb_009193_120--Hb_001343_040 Hb_001449_040 Hb_001449_040 Hb_009193_120--Hb_001449_040 Hb_001442_060 Hb_001442_060 Hb_009193_120--Hb_001442_060 Hb_006373_010 Hb_006373_010 Hb_009193_120--Hb_006373_010 Hb_007083_030 Hb_007083_030 Hb_009193_120--Hb_007083_030 Hb_001511_240 Hb_001511_240 Hb_009193_120--Hb_001511_240 Hb_007919_100--Hb_032050_040 Hb_007919_100--Hb_152202_010 Hb_002947_030 Hb_002947_030 Hb_007919_100--Hb_002947_030 Hb_006909_070 Hb_006909_070 Hb_007919_100--Hb_006909_070 Hb_002273_120 Hb_002273_120 Hb_007919_100--Hb_002273_120 Hb_000300_050 Hb_000300_050 Hb_007919_100--Hb_000300_050 Hb_002414_050--Hb_001662_100 Hb_002414_050--Hb_003544_160 Hb_002414_050--Hb_000022_020 Hb_003517_040 Hb_003517_040 Hb_002414_050--Hb_003517_040 Hb_004452_110 Hb_004452_110 Hb_002414_050--Hb_004452_110 Hb_056691_060 Hb_056691_060 Hb_002414_050--Hb_056691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.81733 10.1492 3.49776 13.5301 7.26558 18.8544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.082 7.33236 6.40318 8.24234 18.7682

CAGE analysis