Hb_006376_010

Information

Type -
Description -
Location Contig6376: 2054-2964
Sequence    

Annotation

kegg
ID csv:101215831
description uncharacterized LOC101215831
nr
ID XP_009594179.1
description PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006376_010 0.0 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
2 Hb_000136_160 0.0477314426 - - calmodulin binding protein, putative [Ricinus communis]
3 Hb_004097_040 0.1521603295 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_002094_040 0.2003618247 - - Organic cation transporter protein [Aegilops tauschii]
5 Hb_000205_200 0.2123403375 - - -
6 Hb_000414_150 0.2449534249 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_044555_010 0.2480939853 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
8 Hb_002259_140 0.2506525091 - - -
9 Hb_004200_030 0.2570249354 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
10 Hb_002081_170 0.261756711 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
11 Hb_005714_050 0.2667070546 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
12 Hb_021906_010 0.2676479599 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
13 Hb_007386_010 0.2745507038 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_001563_020 0.2858847325 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
15 Hb_186158_010 0.2860786911 - - conserved hypothetical protein [Ricinus communis]
16 Hb_117092_010 0.2916336102 - - acyl-CoA oxidase, putative [Ricinus communis]
17 Hb_001386_080 0.3013656018 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
18 Hb_002299_020 0.3014020347 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000896_110 0.3152652343 - - -
20 Hb_092233_010 0.3207202138 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]

Gene co-expression network

sample Hb_006376_010 Hb_006376_010 Hb_000136_160 Hb_000136_160 Hb_006376_010--Hb_000136_160 Hb_004097_040 Hb_004097_040 Hb_006376_010--Hb_004097_040 Hb_002094_040 Hb_002094_040 Hb_006376_010--Hb_002094_040 Hb_000205_200 Hb_000205_200 Hb_006376_010--Hb_000205_200 Hb_000414_150 Hb_000414_150 Hb_006376_010--Hb_000414_150 Hb_044555_010 Hb_044555_010 Hb_006376_010--Hb_044555_010 Hb_000136_160--Hb_004097_040 Hb_000136_160--Hb_000205_200 Hb_000136_160--Hb_044555_010 Hb_000136_160--Hb_002094_040 Hb_004200_030 Hb_004200_030 Hb_000136_160--Hb_004200_030 Hb_002259_140 Hb_002259_140 Hb_004097_040--Hb_002259_140 Hb_021906_010 Hb_021906_010 Hb_004097_040--Hb_021906_010 Hb_004097_040--Hb_044555_010 Hb_007386_010 Hb_007386_010 Hb_004097_040--Hb_007386_010 Hb_001386_080 Hb_001386_080 Hb_002094_040--Hb_001386_080 Hb_002997_130 Hb_002997_130 Hb_002094_040--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_002094_040--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_002094_040--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_002094_040--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_002094_040--Hb_000111_160 Hb_117092_010 Hb_117092_010 Hb_000205_200--Hb_117092_010 Hb_000205_200--Hb_004097_040 Hb_001979_030 Hb_001979_030 Hb_000205_200--Hb_001979_030 Hb_092233_010 Hb_092233_010 Hb_000205_200--Hb_092233_010 Hb_004241_010 Hb_004241_010 Hb_000414_150--Hb_004241_010 Hb_000414_150--Hb_002094_040 Hb_001563_020 Hb_001563_020 Hb_000414_150--Hb_001563_020 Hb_000111_230 Hb_000111_230 Hb_000414_150--Hb_000111_230 Hb_005714_050 Hb_005714_050 Hb_000414_150--Hb_005714_050 Hb_044555_010--Hb_004200_030 Hb_002081_170 Hb_002081_170 Hb_044555_010--Hb_002081_170 Hb_044555_010--Hb_007386_010 Hb_044555_010--Hb_001979_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0648096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133774 0.105095 0 0 0

CAGE analysis