Hb_006387_010

Information

Type -
Description -
Location Contig6387: 16658-17128
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012091068.1
description PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID M1DIP4
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039254 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006387_010 0.0 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
2 Hb_049827_010 0.0036049765 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
3 Hb_003392_010 0.0066741151 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_001863_210 0.0085312783 - - -
5 Hb_185830_100 0.0100391266 - - -
6 Hb_002708_010 0.0117102127 - - -
7 Hb_102355_010 0.0326138041 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
8 Hb_086484_010 0.0367905406 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
9 Hb_003637_030 0.0573239453 - - -
10 Hb_007943_010 0.0916094921 - - -
11 Hb_012264_040 0.143858601 - - -
12 Hb_135941_010 0.1555137184 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
13 Hb_133862_010 0.158845149 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
14 Hb_001066_020 0.1745254532 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
15 Hb_125948_020 0.1936839489 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
16 Hb_038190_040 0.1967443329 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
17 Hb_005432_050 0.1968693112 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
18 Hb_003793_050 0.1970384781 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
19 Hb_023528_010 0.2160408675 - - hypothetical protein POPTR_0013s01580g [Populus trichocarpa]
20 Hb_008424_010 0.2300598408 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_006387_010 Hb_006387_010 Hb_049827_010 Hb_049827_010 Hb_006387_010--Hb_049827_010 Hb_003392_010 Hb_003392_010 Hb_006387_010--Hb_003392_010 Hb_001863_210 Hb_001863_210 Hb_006387_010--Hb_001863_210 Hb_185830_100 Hb_185830_100 Hb_006387_010--Hb_185830_100 Hb_002708_010 Hb_002708_010 Hb_006387_010--Hb_002708_010 Hb_102355_010 Hb_102355_010 Hb_006387_010--Hb_102355_010 Hb_049827_010--Hb_003392_010 Hb_049827_010--Hb_001863_210 Hb_049827_010--Hb_185830_100 Hb_049827_010--Hb_002708_010 Hb_049827_010--Hb_102355_010 Hb_003392_010--Hb_001863_210 Hb_003392_010--Hb_185830_100 Hb_003392_010--Hb_002708_010 Hb_003392_010--Hb_102355_010 Hb_001863_210--Hb_185830_100 Hb_001863_210--Hb_002708_010 Hb_001863_210--Hb_102355_010 Hb_185830_100--Hb_002708_010 Hb_185830_100--Hb_102355_010 Hb_002708_010--Hb_102355_010 Hb_086484_010 Hb_086484_010 Hb_102355_010--Hb_086484_010 Hb_003637_030 Hb_003637_030 Hb_102355_010--Hb_003637_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0544387 0 0 0.0637419 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis