Hb_006400_040

Information

Type -
Description -
Location Contig6400: 24314-27245
Sequence    

Annotation

kegg
ID pmum:103333959
description uncharacterized LOC103333959
nr
ID XP_012082767.1
description PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13931 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52153: 24392-27191 , PASA_asmbl_52156: 14575-54970 , PASA_asmbl_52158: 24392-25171
cDNA
(Sanger)
(ID:Location)		 045_D15.ab1: 24439-26839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006400_040 0.0 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
2 Hb_002027_260 0.0636351058 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
3 Hb_001584_330 0.0657720779 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
4 Hb_001623_420 0.0749102716 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_005306_110 0.0749219807 - - casein kinase, putative [Ricinus communis]
6 Hb_012634_010 0.0752392728 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
7 Hb_000340_510 0.0824313563 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
8 Hb_001728_100 0.0847150802 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
9 Hb_082609_020 0.0865936479 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000032_320 0.088288015 - - protein binding protein, putative [Ricinus communis]
11 Hb_156850_030 0.0885179527 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
12 Hb_001001_060 0.0896065105 - - -
13 Hb_002026_100 0.0900630487 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X2 [Jatropha curcas]
14 Hb_000155_190 0.0911646945 - - conserved hypothetical protein [Ricinus communis]
15 Hb_168707_030 0.0943621264 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
16 Hb_000009_170 0.0951318905 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
17 Hb_002477_160 0.0958026114 - - hypothetical protein L484_013453 [Morus notabilis]
18 Hb_000120_950 0.095946733 - - PREDICTED: protein GRIP [Jatropha curcas]
19 Hb_010381_070 0.0959907311 - - PREDICTED: protein STU1-like [Jatropha curcas]
20 Hb_001057_010 0.0961954687 - - cation-transporting atpase plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_006400_040 Hb_006400_040 Hb_002027_260 Hb_002027_260 Hb_006400_040--Hb_002027_260 Hb_001584_330 Hb_001584_330 Hb_006400_040--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_006400_040--Hb_001623_420 Hb_005306_110 Hb_005306_110 Hb_006400_040--Hb_005306_110 Hb_012634_010 Hb_012634_010 Hb_006400_040--Hb_012634_010 Hb_000340_510 Hb_000340_510 Hb_006400_040--Hb_000340_510 Hb_002027_260--Hb_012634_010 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_001584_330--Hb_001623_420 Hb_001584_330--Hb_005306_110 Hb_004812_010 Hb_004812_010 Hb_001584_330--Hb_004812_010 Hb_000120_950 Hb_000120_950 Hb_001584_330--Hb_000120_950 Hb_000139_410 Hb_000139_410 Hb_001584_330--Hb_000139_410 Hb_001623_420--Hb_000120_950 Hb_000224_170 Hb_000224_170 Hb_001623_420--Hb_000224_170 Hb_001623_420--Hb_005306_110 Hb_002685_140 Hb_002685_140 Hb_001623_420--Hb_002685_140 Hb_010381_070 Hb_010381_070 Hb_001623_420--Hb_010381_070 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060 Hb_001790_020 Hb_001790_020 Hb_012634_010--Hb_001790_020 Hb_002026_100 Hb_002026_100 Hb_012634_010--Hb_002026_100 Hb_001571_040 Hb_001571_040 Hb_012634_010--Hb_001571_040 Hb_082609_020 Hb_082609_020 Hb_012634_010--Hb_082609_020 Hb_002818_040 Hb_002818_040 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.551 39.9978 15.4286 28.6732 84.6416 64.5767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.6073 48.8326 63.6964 31.9454 11.2381

CAGE analysis