Hb_006400_060

Information

Type transcription factor
Description TF Family: C3H
Location Contig6400: 52693-61960
Sequence    

Annotation

kegg
ID rcu:RCOM_1178050
description ATP-dependent RNA helicase, putative
nr
ID XP_012082764.1
description PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
swissprot
ID O22243
description Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2
trembl
ID B9SAR2
description ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1178050 PE=4 SV=1
Gene Ontology
ID GO:0016787
description zinc finger ccch domain-containing protein 31 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52156: 14575-54970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006400_060 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
2 Hb_000483_200 0.0511881362 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_000808_230 0.0598907033 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
4 Hb_003032_040 0.0652053888 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
5 Hb_002079_010 0.0658183506 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
6 Hb_002016_110 0.0687200744 - - transducin family protein [Populus trichocarpa]
7 Hb_006400_030 0.0689150732 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
8 Hb_001959_210 0.0697325056 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
9 Hb_001269_550 0.0698166776 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
10 Hb_007426_030 0.0722002208 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
11 Hb_001199_020 0.0732059751 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
12 Hb_004109_090 0.0754327283 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_007044_140 0.0776365262 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
14 Hb_007441_120 0.0792665881 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
15 Hb_004724_200 0.0801898104 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
16 Hb_001818_090 0.0810603434 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000103_180 0.0812010659 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
18 Hb_000796_220 0.0814241026 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
19 Hb_001500_040 0.0819316673 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_000107_620 0.082910951 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]

Gene co-expression network

sample Hb_006400_060 Hb_006400_060 Hb_000483_200 Hb_000483_200 Hb_006400_060--Hb_000483_200 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_003032_040 Hb_003032_040 Hb_006400_060--Hb_003032_040 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_002016_110 Hb_002016_110 Hb_006400_060--Hb_002016_110 Hb_006400_030 Hb_006400_030 Hb_006400_060--Hb_006400_030 Hb_007426_030 Hb_007426_030 Hb_000483_200--Hb_007426_030 Hb_000483_200--Hb_006400_030 Hb_000483_200--Hb_003032_040 Hb_000483_200--Hb_002016_110 Hb_001959_210 Hb_001959_210 Hb_000483_200--Hb_001959_210 Hb_000808_230--Hb_007426_030 Hb_000796_220 Hb_000796_220 Hb_000808_230--Hb_000796_220 Hb_044728_010 Hb_044728_010 Hb_000808_230--Hb_044728_010 Hb_001545_120 Hb_001545_120 Hb_000808_230--Hb_001545_120 Hb_000170_210 Hb_000170_210 Hb_000808_230--Hb_000170_210 Hb_001818_090 Hb_001818_090 Hb_003032_040--Hb_001818_090 Hb_003032_040--Hb_006400_030 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_000103_180 Hb_000103_180 Hb_002079_010--Hb_000103_180 Hb_002030_030 Hb_002030_030 Hb_002079_010--Hb_002030_030 Hb_002079_010--Hb_007426_030 Hb_063090_010 Hb_063090_010 Hb_002079_010--Hb_063090_010 Hb_000179_020 Hb_000179_020 Hb_002079_010--Hb_000179_020 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.7161 2.52343 2.65119 2.3022 7.13642 7.98997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.13387 5.89279 8.25882 6.25515 3.9076

CAGE analysis