Hb_006414_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig6414: 10363-16029
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52187: 10221-13911
cDNA
(Sanger)
(ID:Location)		 042_P21.ab1: 11479-13911

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006414_020 0.0 transcription factor TF Family: MYB -
2 Hb_000803_060 0.0883318301 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
3 Hb_001489_120 0.1107961543 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
4 Hb_012787_040 0.1121276563 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
5 Hb_011360_090 0.1131007647 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
6 Hb_000103_400 0.1203359914 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
7 Hb_001258_150 0.1261000243 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
8 Hb_000566_190 0.1264312717 - - unnamed protein product [Vitis vinifera]
9 Hb_001662_170 0.1345888588 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
10 Hb_008103_100 0.1350859656 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
11 Hb_008380_010 0.1358921533 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
12 Hb_004032_310 0.136162128 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
13 Hb_000107_440 0.136987865 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
14 Hb_000221_060 0.1398452264 - - -
15 Hb_008246_090 0.144299924 - - -
16 Hb_007007_080 0.1460705432 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003752_120 0.1482475182 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
18 Hb_000220_090 0.1489302966 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
19 Hb_056012_010 0.149136239 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
20 Hb_001345_030 0.1497577921 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_006414_020 Hb_006414_020 Hb_000803_060 Hb_000803_060 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_006414_020--Hb_012787_040 Hb_011360_090 Hb_011360_090 Hb_006414_020--Hb_011360_090 Hb_000103_400 Hb_000103_400 Hb_006414_020--Hb_000103_400 Hb_001258_150 Hb_001258_150 Hb_006414_020--Hb_001258_150 Hb_000803_060--Hb_012787_040 Hb_000803_060--Hb_001258_150 Hb_000803_060--Hb_001489_120 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_000803_060--Hb_004032_310 Hb_000071_140 Hb_000071_140 Hb_001489_120--Hb_000071_140 Hb_001489_120--Hb_001258_150 Hb_001489_120--Hb_004032_310 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_012787_040--Hb_003752_120 Hb_001662_170 Hb_001662_170 Hb_012787_040--Hb_001662_170 Hb_012787_040--Hb_011360_090 Hb_158696_010 Hb_158696_010 Hb_012787_040--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_012787_040--Hb_004106_010 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_011360_090--Hb_001662_170 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_011360_090--Hb_000803_060 Hb_002272_140 Hb_002272_140 Hb_000103_400--Hb_002272_140 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_000473_080 Hb_000473_080 Hb_000103_400--Hb_000473_080 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000103_400--Hb_000803_060 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_001258_150--Hb_000071_140 Hb_001258_150--Hb_011360_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.31229 189.483 49.2995 31.4284 10.8465 14.4147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.25334 5.45191 12.1958 23.9591 16.9424

CAGE analysis